| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Pfam | PF05142 | Domain of unknown function (DUF702) |
| PANTHER | PTHR31604 | PROTEIN LATERAL ROOT PRIMORDIUM 1 |
| TIGRFAM | TIGR01623 | put_zinc_LRP1: putative zinc finger domain, LRP1 type |
| TIGRFAM | TIGR01624 | LRP1_Cterm: LRP1 C-terminal domain |
| PANTHER | PTHR31604:SF30 | PROTEIN LATERAL ROOT PRIMORDIUM 1 |
| MapolyID | Mapoly0049s0083 | - |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSHI | Auxin related protein | Provisional |
Auxin related protein (from nomenclature)
0 core 5 peripheral
Caution: MBEX data are analyzed based on the v7.1 genome.
Link to the original image in MBEX
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g19510.1 tgtttttgcg gtgttgcgaa gcggctgacc ttttgcgcta agtgttcgcc ccccttgtct gcgcgcttcc ttcgcttccg ctttccccga tatcatcttt cacatcctcc ttgtgccccg caacttcgtc tcctcgttga cgttgcgctt gagcgagcga gcgagcgagc gagagagaga gagagagagc gactgagaga gacccgtgtc cgagggtgcg cgcaagagag agagagagag agcgagcgag agatagatcg agacccgtgc gctcgcgtga ctgtgacagt cagcgctcgc gtatcagtgt gcgggagttt atcagtgagc ggctcgggca gtcggtttag tggggggatg tgcgagagcg agtgacggag aaagaagtga gcgaagcgaa gcggattgga ttgtgctggg aagcgaggat tgcgacatat ccggcacttc gcccattagc gagcaaggac aatctgttga catagagaga atacagacgc acaggccgac agacaaacag acagacatcc agccagaaag cgaagtgaga ttgcgagata gagggagggg gatagaaaga gagagagaga gaagagattg agagattgag ggacgcacac tcactcgcat ccacgcacgc gcacagacac tctctctcac ccagccgctc actgtgagca gcagcagcag cagtccagca gcccagcagc agcccagcag catatcagtc ctcgacgagg gtatatttga gtctgaatgc catctacagc acatgtgctc atcagcacct cagctcacat cgcggcgtgc ttctgatctc ggcaaatctt gcccatcctc gcgtggctct tgagctcgcc cggaccctca gaatcgcgca cgtgcgcggg gagtggctgc tcgtcgccgc cgcagcagca gcaaccacga cgaccagtgc agtagtgcct tgcgcagctc gctcgctcgc tggtctcctc gcggctcgat tttgcctcag cagcagtagt cccctctccg gttgtgtcta ctggcggccc tgctctcccc cgagttgacg ccgctcgccc ttcctaagct gttcttgtca tcgcagccgc aatccgaccc gcgcgcggca tctccagcag cagcagcggc ggcagctccg cagtcgagct acatccagca gcagcatcag cagcagcagc aaaaccaggc gaaccacagc agcgggagca gctgcagcaa cagcaacagc cacagcaaca gcggcagccg caaccatccc aaccatttcg cgtcgacaaa ctgggactcc ttgctcgcgc cggctgtcgc gcagaccccc ctgagcgctc tcgcgagcga gttccgccaa tcggtcccca ttgctcatct tcccaacacg ccttccacca tcggcattgc gtcgaacgct gcatcctcga tcttgacctg gagaattcct cgacaagaag cgttcttcgt gggttcccac gctgaagcgc gggacgcagc tgtggcgccg gcagtggcag gcgggggagg ggtgtctggg ggggcgggga gggtggactc ggcccccgac tggaccgtgt cctcccctct gagcgatagg cctttgaaag agcgcgatct ctcgctgggc ttcggcacca gcagcgccca ccgcccgcag gagggcaatg gattatggag ccgcaacgca ggatatggat tcgtcggctc ggccgagggc gctggcgccg ggatccctgg cggattaggg ggctccacgc agcgcgacat ttttagagac attgtgggcc gcgccagcga cgagttcggt gtagggacgc cgtacggtgt cggtgtgcgg cgcgaggagc gcaacgccga ggaagggcgc gggggcagtt ttgtagcgta cgtaggcggc gagggccgag tcgctcatgt ggggccgaat cgcggcgagg agagcggcag tggcagcacc ggccccccgg gggctaagcg caaaggcccc gatgaggagg gccaggcggt ggagggcgga atatggggca atccgggcct gagagagggc gccgaggcat tcaagcgccg cagattggac gtgcccgcct ccatgcgcgg catggacgtg cagcccctgg gcggcgccga cgtgcgcccc ggcgacgccc gcccggagaa caaagaggac gagcagcagc acgcgctcca gctgcacgac gcgcagcgcg ccaaggcgcc tccgcagccc cccgggggcg ccgggggcgt cagcgctggg actcaaggcg gcacggcctg cctcgagtgc ggcaatcagg ccaaaaagga ctgcctgcat cagagatgcc ggacctgctg caagagccgg ggcctctcgt gccccaccca cataaaaagc acttgggtcc ccgcggccaa gcgacgagag cgccaggctg cagaggctgc tgcagctgct gccggccagc cgcgccccaa atccaaacgc gctcgctctc tcgccctctc ggtgcccgcc aatccgacga cctcccatac caacacctcc gccggcacgt ctccgcgcgg ttctgatatc aattctggcc aaccaggtta gcactcgccc ggccatcaat cccatcgccc ccgctgcctc ggattcctcc catctcctct cgcactgaca tgacatgcac accactgctc catctaattt ctccatccct ctcgtcctct cgctctctcg ttcacgtact cgttctttct gctcggatcg tcgcagcctc ttaattcctc ggaattctgg gtgacacccg cgggcttcgc gcttacgtat cgagcatggc ccccccgtgc gcccggtttg catccgatga cagcagacgc tcgcgccact tcacattccg cagctttgat gaggattagc acttttttcc agacaattta gacgctaagc aaagtgatca atgtcccgcg ccgtctgcca ccgttctgag ccagttttca gtattcgcag ctccccgcag gagctgctgt ccatgccgag cagacaatga ggctaatttt cacggggcgt gctggccttc gtgcctcgcc gcacctctct cggatcacaa ttcagtggtg cggtggcgag tccaccgcac cagccagcgc aggtctgagg aatgtgtacg cccgaggtcc acgagacatt cggagcaggt ggctgaaccc gccagccccg agaatataga agccgtcgga cctcgaggcg cttgcattga gccatcgcag cacccgagag agccgagagc cgaagcttag aagccttagc tcgaaatctg tagaatctcg agagcgggcc aatgtgtgat ggagtgagtg aagtcggggt tggggtgggc agaaattcgt gaaatgcatg tgacggggct ctagccgagt ctaattgtgg gattgggtgg ctcgcgcagg gagagggcct ctgccatcgg agctgaggac gcaagcgctg ttcaagtgcg tacgggtgac gggcgtagag gacggtgatc acgaatttgc ctaccaggcc acggtgaaga ttggaggcca tattttcaag ggcgtgctct acgaccaagg tatggacaat ggaagcacca gcgccacgaa tgtcgcggac ctgcagctgg gcgggaggag catgcccacg agctcggccc tgatcgatcc gacaggactc tacggaaatc ccaacagcgc tctcctggga ggtgagaatc ttagttcttt tggaggatta tccaatctgt ggtggcataa caggcagcaa ggatagagag ggatccgcac tggcgaagac gaagaagaag acgaaggaga agaaggagaa gggctatgga tctttcgaat tgaatctgga gggggagggt cgcgagtcag gtggtcttac atacctgacg atgatgatga tgatgatggc gcgagaagtg tccttgcttt cgcgaatcaa tcaattggtc gttcgttcgt cgaaatctta gagcatggcc cgtgcaagtg ggtccgtctg gatgataatt cttgttcacc tcggcggcga ggttaagatt tgaccgagcc tccttcgatg gtggtcgagc taggtggggg tgattgatta taacaatgat gatgaagaag aagaagagga ggaggaggag aaggagaagg agaagcatga ttatgagaaa gcggtgtgat ccttgacctc gggtgctctc aagttggacc aagttttgag gcctcggcgt ctgaagcttc gtatctgctg tcgccggtcg caacggaggc aattcgtttt gcctccgcac acattttagc ccctgccgta agagacgtgt ccgctgtcat gcttaaattt gcgcaatggg cacaatgggt gtcgtcttag aagaggggat ttgcatgcct gaggagcctt cttccgtcga atggaggaag tggatggatg atcatgagct tcggagacgc ccgagcactt agtagagtga gtcgcaaggt gctattggct gacggaagga tggtgttgag atctcagtga gacagctgac tgttgtggtg ccttggatct ccttctcgcg gaacctgcta gatttattag atcgctgagt cccgtccggt ccacactcat agagagagag agagagagag agagagagag agagagagag agagagagag agagagagag agagactatg gaccgcaatg gtgtcaacga gcacccagtt cagtgcagtt cagttcaatg gcacccagtt cagtgcagca gctctcgatg tttgtaagct ccgggagaat tgcagtcgtc ttatctcccg ggcaacattt attgagcgtt tcaccagctc ctcataaaaa aacataaagc cggttcactc tctgggtggt gctgttccgg acctcggttc tctgaaaatc tcagacagag acctcccagc atagcgctag ctcgcctttc gccaggccac gaacttctga gtaggcaagg agacccattg tgtagctaca ttggcggtaa aaatttctag gagcagcaca ttctcataga cgagcagcag cagcagtgcc ttgcgatttt ctcgcgcctg cgttcttctg atttgaggct gaagttcagc gatcctcgca gtgtccagta aattagaact ggtgagagtt atatatagta cagtacctgg atcttttttg tctataaggt ctcagtagtg gaagcatttt ttagtccaga aggtggaagg tgagggcctc gtcttagcgc accgcttcac ggtctaagat gtctaggatg gtgttccgaa ggagtgtcag tggctcagta tacccgagta accttccagg ttctcacatg tcggtcgcag gcaggaggca ggcacgcagg caggcaggca ggcaggcagg cagggcctgt tcgttcacac agcacgttga tctcttcagc ttagagatct catgatcttg gaacaatttt gaaagatact ggccagatga gaggtcaata gttctactcg tcggttggag tgttttcgct tgatggacat gtctgaccat atggtcctgt gcattgtctt tgcagcgctc cgataagaca aaagaaagtc caccccgaca tcgaggctaa aatgttttgt aggacctctt gtggatacaa ccattcttgc tgtttcagtt cagttctagg gaaatcaatc gcttcttcct tcttcctatg tcctttcgtc tgggctcttc atcggcagca ccgtttcact tgagatgaca aggggctttc atccgctctc gatgaggcca tattttctag caacttgccg aatctgccaa ttggtctgtg caaccgattg tatgtatgct ctgagttgtc tatgtagctg gtagctcttc tgtatttata ttcatgagta ttcgaactcg cagagatgcc attacaattt gtcttcctcg actattcgag gccaaagatt gattacactg tctgtgggca tgcatg |
mRNA UTR + CDS |
| >Mp3g19510.1 tgtttttgcg gtgttgcgaa gcggctgacc ttttgcgcta agtgttcgcc ccccttgtct gcgcgcttcc ttcgcttccg ctttccccga tatcatcttt cacatcctcc ttgtgccccg caacttcgtc tcctcgttga cgttgcgctt gagcgagcga gcgagcgagc gagagagaga gagagagagc gactgagaga gacccgtgtc cgagggtgcg cgcaagagag agagagagag agcgagcgag agatagatcg agacccgtgc gctcgcgtga ctgtgacagt cagcgctcgc gtatcagtgt gcgggagttt atcagtgagc ggctcgggca gtcggtttag tggggggatg tgcgagagcg agtgacggag aaagaagtga gcgaagcgaa gcggattgga ttgtgctggg aagcgaggat tgcgacatat ccggcacttc gcccattagc gagcaaggac aatctgttga catagagaga atacagacgc acaggccgac agacaaacag acagacatcc agccagaaag cgaagtgaga ttgcgagata gagggagggg gatagaaaga gagagagaga gaagagattg agagattgag ggacgcacac tcactcgcat ccacgcacgc gcacagacac tctctctcac ccagccgctc actgtgagca gcagcagcag cagtccagca gcccagcagc agcccagcag catatcagtc ctcgacgagg gtatatttga gtctgaatgc catctacagc acatgtgctc atcagcacct cagctcacat cgcggcgtgc ttctgatctc ggcaaatctt gcccatcctc gcgtggctct tgagctcgcc cggaccctca gaatcgcgca cgtgcgcggg gagtggctgc tcgtcgccgc cgcagcagca gcaaccacga cgaccagtgc agtagtgcct tgcgcagctc gctcgctcgc tggtctcctc gcggctcgat tttgcctcag cagcagtagt cccctctccg gttgtgtcta ctggcggccc tgctctcccc cgagttgacg ccgctcgccc ttcctaagct gttcttgtca tcgcagccgc aatccgaccc gcgcgcggca tctccagcag cagcagcggc ggcagctccg cagtcgagct acatccagca gcagcatcag cagcagcagc aaaaccaggc gaaccacagc agcgggagca gctgcagcaa cagcaacagc cacagcaaca gcggcagccg caaccatccc aaccatttcg cgtcgacaaa ctgggactcc ttgctcgcgc cggctgtcgc gcagaccccc ctgagcgctc tcgcgagcga gttccgccaa tcggtcccca ttgctcatct tcccaacacg ccttccacca tcggcattgc gtcgaacgct gcatcctcga tcttgacctg gagaattcct cgacaagaag cgttcttcgt gggttcccac gctgaagcgc gggacgcagc tgtggcgccg gcagtggcag gcgggggagg ggtgtctggg ggggcgggga gggtggactc ggcccccgac tggaccgtgt cctcccctct gagcgatagg cctttgaaag agcgcgatct ctcgctgggc ttcggcacca gcagcgccca ccgcccgcag gagggcaatg gattatggag ccgcaacgca ggatatggat tcgtcggctc ggccgagggc gctggcgccg ggatccctgg cggattaggg ggctccacgc agcgcgacat ttttagagac attgtgggcc gcgccagcga cgagttcggt gtagggacgc cgtacggtgt cggtgtgcgg cgcgaggagc gcaacgccga ggaagggcgc gggggcagtt ttgtagcgta cgtaggcggc gagggccgag tcgctcatgt ggggccgaat cgcggcgagg agagcggcag tggcagcacc ggccccccgg gggctaagcg caaaggcccc gatgaggagg gccaggcggt ggagggcgga atatggggca atccgggcct gagagagggc gccgaggcat tcaagcgccg cagattggac gtgcccgcct ccatgcgcgg catggacgtg cagcccctgg gcggcgccga cgtgcgcccc ggcgacgccc gcccggagaa caaagaggac gagcagcagc acgcgctcca gctgcacgac gcgcagcgcg ccaaggcgcc tccgcagccc cccgggggcg ccgggggcgt cagcgctggg actcaaggcg gcacggcctg cctcgagtgc ggcaatcagg ccaaaaagga ctgcctgcat cagagatgcc ggacctgctg caagagccgg ggcctctcgt gccccaccca cataaaaagc acttgggtcc ccgcggccaa gcgacgagag cgccaggctg cagaggctgc tgcagctgct gccggccagc cgcgccccaa atccaaacgc gctcgctctc tcgccctctc ggtgcccgcc aatccgacga cctcccatac caacacctcc gccggcacgt ctccgcgcgg ttctgatatc aattctggcc aaccagggag agggcctctg ccatcggagc tgaggacgca agcgctgttc aagtgcgtac gggtgacggg cgtagaggac ggtgatcacg aatttgccta ccaggccacg gtgaagattg gaggccatat tttcaagggc gtgctctacg accaaggtat ggacaatgga agcaccagcg ccacgaatgt cgcggacctg cagctgggcg ggaggagcat gcccacgagc tcggccctga tcgatccgac aggactctac ggaaatccca acagcgctct cctgggaggt gagaatctta gttcttttgg aggattatcc aatctgtggt ggcataacag gcagcaagga tagagaggga tccgcactgg cgaagacgaa gaagaagacg aaggagaaga aggagaaggg ctatggatct ttcgaattga atctggaggg ggagggtcgc gagtcaggtg gtcttacata cctgacgatg atgatgatga tgatggcgcg agaagtgtcc ttgctttcgc gaatcaatca attggtcgtt cgttcgtcga aatcttagag catggcccgt gcaagtgggt ccgtctggat gataattctt gttcacctcg gcggcgaggt taagatttga ccgagcctcc ttcgatggtg gtcgagctag gtgggggtga ttgattataa caatgatgat gaagaagaag aagaggagga ggaggagaag gagaaggaga agcatgatta tgagaaagcg gtgtgatcct tgacctcggg tgctctcaag ttggaccaag ttttgaggcc tcggcgtctg aagcttcgta tctgctgtcg ccggtcgcaa cggaggcaat tcgttttgcc tccgcacaca ttttagcccc tgccgtaaga gacgtgtccg ctgtcatgct taaatttgcg caatgggcac aatgggtgtc gtcttagaag aggggatttg catgcctgag gagccttctt ccgtcgaatg gaggaagtgg atggatgatc atgagcttcg gagacgcccg agcacttagt agagtgagtc gcaaggtgct attggctgac ggaaggatgg tgttgagatc tcagtgagac agctgactgt tgtggtgcct tggatctcct tctcgcggaa cctgctagat ttattagatc gctgagtccc gtccggtcca cactcataga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gactatggac cgcaatggtg tcaacgagca cccagttcag tgcagttcag ttcaatggca cccagttcag tgcagcagct ctcgatgttt gtaagctccg ggagaattgc agtcgtctta tctcccgggc aacatttatt gagcgtttca ccagctcctc ataaaaaaac ataaagccgg ttcactctct gggtggtgct gttccggacc tcggttctct gaaaatctca gacagagacc tcccagcata gcgctagctc gcctttcgcc aggccacgaa cttctgagta ggcaaggaga cccattgtgt agctacattg gcggtaaaaa tttctaggag cagcacattc tcatagacga gcagcagcag cagtgccttg cgattttctc gcgcctgcgt tcttctgatt tgaggctgaa gttcagcgat cctcgcagtg tccagtaaat tagaactggt gagagttata tatagtacag tacctggatc ttttttgtct ataaggtctc agtagtggaa gcatttttta gtccagaagg tggaaggtga gggcctcgtc ttagcgcacc gcttcacggt ctaagatgtc taggatggtg ttccgaagga gtgtcagtgg ctcagtatac ccgagtaacc ttccaggttc tcacatgtcg gtcgcaggca ggaggcaggc acgcaggcag gcaggcaggc aggcaggcag ggcctgttcg ttcacacagc acgttgatct cttcagctta gagatctcat gatcttggaa caattttgaa agatactggc cagatgagag gtcaatagtt ctactcgtcg gttggagtgt tttcgcttga tggacatgtc tgaccatatg gtcctgtgca ttgtctttgc agcgctccga taagacaaaa gaaagtccac cccgacatcg aggctaaaat gttttgtagg acctcttgtg gatacaacca ttcttgctgt ttcagttcag ttctagggaa atcaatcgct tcttccttct tcctatgtcc tttcgtctgg gctcttcatc ggcagcaccg tttcacttga gatgacaagg ggctttcatc cgctctcgat gaggccatat tttctagcaa cttgccgaat ctgccaattg gtctgtgcaa ccgattgtat gtatgctctg agttgtctat gtagctggta gctcttctgt atttatattc atgagtattc gaactcgcag agatgccatt acaatttgtc ttcctcgact attcgaggcc aaagattgat tacactgtct gtgggcatgc atg |
CDS |
| >Mp3g19510.1 atgcgcggca tggacgtgca gcccctgggc ggcgccgacg tgcgccccgg cgacgcccgc ccggagaaca aagaggacga gcagcagcac gcgctccagc tgcacgacgc gcagcgcgcc aaggcgcctc cgcagccccc cgggggcgcc gggggcgtca gcgctgggac tcaaggcggc acggcctgcc tcgagtgcgg caatcaggcc aaaaaggact gcctgcatca gagatgccgg acctgctgca agagccgggg cctctcgtgc cccacccaca taaaaagcac ttgggtcccc gcggccaagc gacgagagcg ccaggctgca gaggctgctg cagctgctgc cggccagccg cgccccaaat ccaaacgcgc tcgctctctc gccctctcgg tgcccgccaa tccgacgacc tcccatacca acacctccgc cggcacgtct ccgcgcggtt ctgatatcaa ttctggccaa ccagggagag ggcctctgcc atcggagctg aggacgcaag cgctgttcaa gtgcgtacgg gtgacgggcg tagaggacgg tgatcacgaa tttgcctacc aggccacggt gaagattgga ggccatattt tcaagggcgt gctctacgac caaggtatgg acaatggaag caccagcgcc acgaatgtcg cggacctgca gctgggcggg aggagcatgc ccacgagctc ggccctgatc gatccgacag gactctacgg aaatcccaac agcgctctcc tgggaggtga gaatcttagt tcttttggag gattatccaa tctgtggtgg cataacaggc agcaaggata g |
Protein |
| >Mp3g19510.1 MRGMDVQPLG GADVRPGDAR PENKEDEQQH ALQLHDAQRA KAPPQPPGGA GGVSAGTQGG TACLECGNQA KKDCLHQRCR TCCKSRGLSC PTHIKSTWVP AAKRRERQAA EAAAAAAGQP RPKSKRARSL ALSVPANPTT SHTNTSAGTS PRGSDINSGQ PGRGPLPSEL RTQALFKCVR VTGVEDGDHE FAYQATVKIG GHIFKGVLYD QGMDNGSTSA TNVADLQLGG RSMPTSSALI DPTGLYGNPN SALLGGENLS SFGGLSNLWW HNRQQG |