Mp4g04910



Description

Annotation

Database ID Description
CDD cd04873 ACT_UUR-ACR-like
Pfam PF00010 Helix-loop-helix DNA-binding domain
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
CDD cd11443 bHLH_AtAMS_like
PANTHER PTHR31945 TRANSCRIPTION FACTOR SCREAM2-RELATED
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
PANTHER PTHR31945:SF98 BHLH TRANSCRIPTIONAL FACTOR
Gene3D G3DSA:4.10.280.10 HLH
SMART SM00353 finulus
GO GO:0046983 protein dimerization activity
MapolyID Mapoly0150s0015 -

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH16 transcription factor, bHLH Published
MpICE1 basic helix loop helix transcription factor Published
MpICE1 is an orthologue of Arabidopsis ICE1 and ICE2 genes, ICE2 is also known as SCREAM2 (SCRM2) MpICE1 is MpBHLH16

Associated Literature (AI-based literature mining, Beta-version)

basic helix loop helix transcription factor; Mutant alleles produced by genome editing and sporeling transformation of F1 from Tak1 X Tak2 cross (from nomenclature)

0 core 2 peripheral

Lu, Y.-T., et al. (2024) · Current Biology  research experimental comparator
ICE bHLH (MpbHLH16, Mp4g04910); heterodimer partner context.
Moriya, K. C., et al. (2023) · Nature Plants  research experimental comparator
Class-IIIb bHLH (Mp4g04910); ICE/SCRM-like (comparison).

Transcript models

Transcript ID Location Sequences Extract region
Mp4g04910.1 chr4:5601281..5606206 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v7.1 genome.

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.