Mp4g12650



Description

Annotation

Database ID Description
KEGG K11131 DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
KOG KOG2529 Pseudouridine synthase; [J]
ProSiteProfiles PS50890 PUA domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain
TIGRFAM TIGR00451 unchar_dom_2: uncharacterized domain 2
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain)
PANTHER PTHR23127:SF0 H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1
SUPERFAMILY SSF88697 PUA domain-like
Gene3D G3DSA:2.30.130.70 -
TIGRFAM TIGR00425 CBF5: putative rRNA pseudouridine synthase
SMART SM01136 DKCLD_2
Pfam PF01472 PUA domain
PANTHER PTHR23127 CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5
SUPERFAMILY SSF55120 Pseudouridine synthase
SMART SM00359 pua_5
Pfam PF08068 DKCLD (NUC011) domain
CDD cd02572 PseudoU_synth_hDyskerin
Coils Coil Coil
GO GO:0009982 pseudouridine synthase activity
GO GO:0001522 pseudouridine synthesis
GO GO:0003723 RNA binding
GO GO:0006396 RNA processing
GO GO:0009451 RNA modification
MapolyID Mapoly0138s0004 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCBF5 transcription factor, CBF5 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g12650.1 chr4:14171853..14174339 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.