Mp4g21220



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00249 Myb-like DNA-binding domain
PANTHER PTHR31442 HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
PANTHER PTHR31442:SF21 HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
TIGRFAM TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.10.10.60 -
GO GO:0003677 DNA binding
MapolyID Mapoly0101s0068 -

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP7 transcription factor, GARP Published
MpLUX LUX Published
MYB-like transcription factor, a component of circadian clock

Associated Literature (AI-based literature mining, Beta-version)

Core evening-complex gene and central subject of the paper. Loss-of-function mutants show increased thallus surface area with a ~40% decrease in chlorenchyma cells, while overexpression yields small, compact, dark-green thalli with inhibited cell elongation. Expressed in photosynthetic filaments and developing tissues, and forms an EC with MpEFL and MpELF3.

3 core 1 peripheral

Lagercrantz, U., et al. (2022) · PLoS ONE  research experimental subject
Core evening-complex gene and central subject of the paper. Loss-of-function mutants show increased thallus surface area with a ~40% decrease in chlorenchyma cells, while overexpression yields small, compact, dark-green thalli with inhibited cell elongation. Expressed in photosynthetic filaments and developing tissues, and forms an EC with MpEFL and MpELF3.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research experimental subject
Two independent mutant alleles (Mpluxge-9, Mpluxge-19) show arrhythmic phenotypes with dampened rhythm and elevated MpPRR; free IAA oscillations are lost in the mutant.
Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
Single LUX ARRHYTHMO homologue with evening-phased circadian expression; promoter:LUC shows bioluminescence rhythms under day/night and constant light, expressed in meristematic regions.
Lagercrantz, U., et al. (2021) · New Phytologist  research experimental background
LUX; evening-complex clock gene (output/component).

Transcript models

Transcript ID Location Sequences Extract region
Mp4g21220.1 chr4:23975741..23980693 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g21220.2 chr4:23977761..23980846 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v7.1 genome.

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.