Mp1g00340



Description

Annotation

Database ID Description
ProSiteProfiles PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50030 Ubiquitin-associated domain (UBA) profile.
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site.
PANTHER PTHR23068 DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
CDD cd14270 UBA
Pfam PF00145 C-5 cytosine-specific DNA methylase
SUPERFAMILY SSF46934 UBA-like
ProSiteProfiles PS51680 SAM-dependent methyltransferase DRM-type domain profile.
MapolyID Mapoly0103s0053 -
GO GO:0008168 methyltransferase activity
GO GO:0005634 nucleus
GO GO:0006306 obsolete DNA methylation
GO GO:0005515 protein binding
GO GO:0016458 obsolete gene silencing

Nomenclature

Gene symbol Product Transcript ID Status
MpDRMa DOMAINS REARRANGED METHYLASE, DNA (cytosine-5-)-methyltransferase Published

Associated Literature (AI-based literature mining, Beta-version)

DOMAINS REARRANGED METHYLTRANSFERASE family protein associated with de novo methylation in all sequence contexts. Its expression was measured across the life cycle, with expression in young sporophytes.

1 core 2 peripheral

Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
DOMAINS REARRANGED METHYLTRANSFERASE family protein associated with de novo methylation in all sequence contexts. Its expression was measured across the life cycle, with expression in young sporophytes.
Ikeda, Y., et al. (2018) · Plant and Cell Physiology  research experimental comparator
Domains-rearranged methyltransferase (non-CG methylation); slightly increased in Mpmet.
Aguilar-Cruz, A., et al. (2019) · New Phytologist  research citation background
Review: domains-rearranged methyltransferase for de novo methylation.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g00340.1 chr1:331063..339632 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g00340.2 chr1:331063..339725 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g00340.3 chr1:331063..339632 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g00340.4 chr1:331063..339632 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g00340 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g00340 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.