Mp1g00480



Description

Annotation

Database ID Description
SMART SM00849 Lactamase_B_5a
ProSiteProfiles PS50902 Flavodoxin-like domain profile.
Pfam PF01613 Flavin reductase like domain
Gene3D G3DSA:3.40.50.360 -
Pfam PF19583 ODP family beta lactamase
SUPERFAMILY SSF50475 FMN-binding split barrel
PANTHER PTHR32145 DIFLAVIN FLAVOPROTEIN A 2-RELATED
SUPERFAMILY SSF56281 Metallo-hydrolase/oxidoreductase
CDD cd07709 flavodiiron_proteins_MBL-fold
Gene3D G3DSA:3.60.15.10 -
SMART SM00903 Flavin_Reduct_2
Gene3D G3DSA:2.30.110.10 -
SUPERFAMILY SSF52218 Flavoproteins
MapolyID Mapoly0103s0039 -
GO GO:0010181 FMN binding

Nomenclature

Gene symbol Product Transcript ID Status
MpFLV3 flavodiiron proteins Provisional

Associated Literature (AI-based literature mining, Beta-version)

flavodiiron proteins (from nomenclature)

0 core 1 peripheral

Shimakawa, G., et al. (2017) · Plant Physiology  research experimental comparator
Flavodiiron isozyme FLV3 (Mapoly0103s0039); partners with FLV1 in the FLV1/3 alternative electron flow.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g00480.1 chr1:443151..447894 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g00480 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g00480 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.