Mp1g00960



Description

Annotation

Database ID Description
ProSitePatterns PS00183 Ubiquitin-conjugating (UBC) active site signature.
SUPERFAMILY SSF54495 UBC-like
ProSiteProfiles PS50127 Ubiquitin-conjugating (UBC) core domain profile.
Pfam PF00179 Ubiquitin-conjugating enzyme
Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme
CDD cd00195 UBCc
PANTHER PTHR24067 UBIQUITIN-CONJUGATING ENZYME E2
FunFam G3DSA:3.10.110.10:FF:000044 protein PEROXIN-4 isoform X1
SMART SM00212 ubc_7
KEGG K10689 peroxin-4 [EC:2.3.2.23]
KOG KOG0417 Ubiquitin-protein ligase; [O]
MapolyID Mapoly0029s0150 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPEX4 PEX4, E2 ligase Published

Associated Literature (AI-based literature mining, Beta-version)

PEX4, E2 ligase; E2 ligase (from nomenclature)

0 core 1 peripheral

Goto-Yamada, S., et al. (2022) · Frontiers in Cell and Developmental Biology  review citation background
M. polymorpha PEX4 (peroxin/peroxisome biogenesis)

Transcript models

Transcript ID Location Sequences Extract region
Mp1g00960.1 chr1:965586..968169 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g00960 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g00960 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.