Mp1g01300
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd09992 | HDAC_classII |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase |
| PANTHER | PTHR10625 | HISTONE DEACETYLASE HDAC1-RELATED |
| Pfam | PF00850 | Histone deacetylase domain |
| PRINTS | PR01270 | Histone deacetylase superfamily signature |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain |
| KOG | KOG1343 | Histone deacetylase complex, catalytic component HDA1; N-term missing; [B] |
| MapolyID | Mapoly0029s0117 | - |
| GO | GO:0016575 | obsolete histone deacetylation |
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO | GO:0008134 | transcription factor binding |
| GO | GO:0004407 | histone deacetylase activity |
| GO | GO:0000118 | histone deacetylase complex |
| GO | GO:0005737 | cytoplasm |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpHDAC1 | Chromatin related protein | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Chromatin related protein (from nomenclature)
0 core 1 peripheral
Zhou Y, Hamiaux C, Andre CM, Cooney JM, Schwinn KE, van Klink JW, Bowman JL, Davies KM, Albert NW. (2025)
· The New phytologist research experimental tool
Reference/housekeeping gene used to normalize qPCR/expression data.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g01300 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g01300.1 GCATTTTCAT GTGAAATCCG AGGTCTTGCA CAATGGCTGC TGCACGAGGA GTGATGAAGG CCAGCGCCAA CCCAGGCTTA GGCCTGGGCC TCGGGCCTGG TGTTCTCCGC CAGCGCCTTG CTCCTACCTT CGGTGAGACC GGCTCGCCTG CCCTCCTGCC TTCCTGTCGT CCTGTTTGAG TTCCATTTCA TAATGTCTTG CCGTGCTGCA AATCTACTGC CCTCGACCTC ACGTGGTTGA TGAACCCGGT TCTTGGCCCT CTGTCGAGCT CAGTCTCAGT GTTCACATCT CAAGCATCGT TCGGGGTTGG ATCTCAGAGT GTGCTAATTT TGCTTTCGAA ATTCAGAGAT TGAATTTACA GTGGCGGCGG GTTGATCGAT CGTCTATTTC GTAGGCGGTT GCAGGTTGAT CTTGTTGCCC TCTCTCTGAG GCCTTGATCG AGTTTACCAA CCTGAACAGA AAAGATAGAT TTGGCCAGAA TTCATAGATT TTTTGTGTTG ATCTGCTGCG ATCAGTGAAT GGTGTTTTGA GATTTTAACT CAAGGGTTTA AGGGAGAGAC TTTCTATTGG GAGGGGTTTT CAGCTGAGGC TGGCGTGATG AGCGTATTGT TTGATATTTG CAGGGATTCA TGAGAACATT GCCGGAACTT CTACATTTCA AAGGGGCTAC TCTGTACCCA AGTTGTCTTC TTTTTCTGCA AAATGGGGTG ACAATAATTC CTACAGCAAG AGCGGTTCAT TATTCGATGG TGCCAATTTG TCACCGTTGT CAGGACAGTC GAGATCGAAA AGAGAGTTGC TCCTTCCCGT ACCGACGCTC GTGGATTCGA AGGTCATATT TTCTGCTGCA CCAGCGTACG GGCATAACAA GGTGAGTTGG GCAATTTTTT TCGTTTTCTT AGCATTAGAC AGTTTCCAGC TCACAATCTA CTATATAATG AGATTAACGC GATATGTTTC AATACTCTGA CTTGTCAGGT TGAATGAGAT CTTTTTTATT TTTAGAGTGT CCTCATTAGC TCAATTGGTC CAAATAGCTT TAAAGAATCG GAACTTTTTT ATATATTGAA GCTTGTTTTT GTCGCTTTTC CTCTATTCAG GAGGGTCACC CCGAATGTAA GGCTAGAGTA TCAGCTATAA TGAAAGCTCT CGATCAAGCC GGACTTGCAG ATGAGGTAGG GTAAGCTCAT GCGCCTGCCA TCTCCTCATA TCCTTACCTT CCTTTTTTTC TTTTCTTACC TAGCCTCAAG TCTGGGGAAT TTTGATCGTG ACATTGGTGA GAAGCAGACT GTAACCAGCT CTAGAACCCT AGTCTCATTA ATTCACCTCG TTGATTTCTT CCTTGATGGT TTAGAAGGTC ATCTCTCTTC AGTTTACAGC GAATAACGAG TAAGTTGTAG CATCATTAGG ACATGATTTC AATGTTGAAA ACTTCGTTAC GGTGAAGGTT AAACTCTACT GGGTAGCCAA CTCTTATTAA ACACTTGTCT GCTCAAAGGC ATCAGTTAAC TGACAGTCGA CACTATAGTG ACATCTTTCT CTCGCTTTTG GATCCTCAGC GAATGTTGGT TTTTAGGAGC TGTCCCACTA ATAGATCTTG TCGCATGAAA TTCGTCACCT GTCGTCACGT TCAAACCACA ACGATGTTGA AACCGAAATA ATAATCTCGA TTTTTTTTCC TTTTTTTCAT CTCATGGACA GAGTCGAGCT AAGGAGATTC TCCGGCTAGA TGTGAAAAAT ATGGCTTCCG TTGAGGAAGT TGCCACCGTA CACAATATGA GCTACGTGAA AGGTCTTCGC GAGGTCCGTC TCATGCCTTC TCTTTTCCAG TGAGAATTTT GTAAGCAGCG AGTTCGTCCG ACCTGTTTAT TATACTCATG TCATGTTACA AGCAAGGCCT TCTGAGTCAA ACTGAAAGTG ACCTTGACTC AGCGTGAGAG ATTTATTATT CCCTGATCGG TCAAAAGTGC TTTCTGGCTA CAGATTATGG ATAAAGCTCG CGAGGAGAAG CTCATATTAC TCGATTCCAC AGGTCCCACA TACGCCACTG AGAATGTTCG TATTTCATGC ATTTGCTCAA GTTTGTTCAT GTGTAAATTT GTGGAAAGTT TAATATATGA GAATTGTTTT GTGGAAGTTG ACGCTCTGCT GTAACCTGTA AATGATGAAT GACACGTTAG TTCAATGAGC ACGTTGGCTG TGTGTTCTGT TTAGAAAAAT AAGAAATACT GACGCATGAA ATATTATGTC TGTTGAAATT GGCCAGTAGC TAAAGCTAAC TGATACATAA CGAAAGCTTC TTCCCAATGT AATCTGAACC TCTTGATATA AACCACGTAT AGGAACTTAA CCTGCAGGCA TTTGTGCTGC GAATTTACCA TACGCTATGC GTAAGAAGAT GAAAGTACAT TCCCGGTACA TTTGGACCTG GAATAAATTT TTTCTTATTC TTGAAACTTC TACGCCTGAA GTTCAGCTAA CACTAGTGTG CTGCAGACTT ATAGGGAAGC GATGATGGGA GCAGGAGCTA GCCTGGCAGT TCTTGACCAT GTGGTAATGT TTCCAACCTT CTTCTCACCT CATAGTCTAA GCACGGATCA GCTAGGTAAG GGCTTCTAGG TTGAACCTCG TCTTGAGGAA AGATCCCCCA GAAGAAAGAG CCTCTTTCCT CGGAACTATT CTTTTCTCGT TTCCACCTCT CAAGACTTTC CATATTTCTA CTACTAGCAC CGCCCAGCCA GAGCAAGGGT TTCATGTGGT AATGCTATGG CTGGCAAGTG TGGAGTACAG GTTCTAGTTT GGAGTCATCG CTGTTGCAAA TGTCAACGAA ATTGCTGTTG TTGCCTAGCT TATCGGCCTA AAGTCATTTT AAGGACAATT CTAGCCAATC CGAATCATAC TGCATACACA TAATGCCTAA TCCATCTCTT GTCGAGCTCT GTGGGAATTT GACGGCATTG TCTTAACCCG TCCTTGGACT TGGAGTTGAT GAGGGTTTTG GATAGTAGTG AAAAAGAAGA CTTTTGATCT TCTTTGAATC TGCTTCTCCG TGTTTCACCT ACTTTTTCGA AGCTGAACTT GCATTCGACA TTCATTTGGG GACAGAGTAC TTATTTGTCT TGGACATTCA GGTTGCTGCT TCAAGAGAGA CTTCCACTCC ACCAGTTGGT TTCGCTTTGG TGCGACCTCC AGGTCACCAT GCTATAGCAA CTCGACCAAT GGGCTTCTGT GTATTTGGCA ACGTGGCTGT GGCAGCAAGG CATGCGCAGC GAGTGCACGG GCTGCAGCGT GTGTTTATCA TTGACTTTGA CGTACATCAT GGAAATGGCA CCAATGATAT CTTTTATGAA GATCCAAATG TCTACTATCT TTCTACTCAT CAGGCATGTC AATCTTACAC TGAGCCTTGC AGTTTCTTGT TATTATACAT CCTTCGTACC CGTTTTCTAT ATCAGGTCGT GTCTTGAGTC TCAAGAGAGC TGAAGTTGTG AAGTGATAAT TCGATCTGCT TCACGTTGAC CAAAATCTCA TGGAAGTGGA CTTAGTCGAG CAGGTTGGTG GGTTTCCCGG AACCGGGAAA ATCGATGAAG TTGGGGAGGG CAAGGGAGAG GGCACAACTC TTAATCTTCC CCTACCGGGG GGCTCCGGGG ATGAAGCTAT GTCTGCGGTC TTCGATGAAG TTATTGTTCC TGCAGCGCAA CGATTTAAGC CTGATATTAT TCTTGTCTCT GCTGGGTAAT ATTACACAAA ACTCTTGCTT TTTATGCGTG AAATATACAT AGGAGGTGGT CTGGATGGTT AATGCCTAGA TCAAATCACA AAACCTTAAT GTTCCTCATT TTTAATTGCG TCATTGAAGT GATTAATGTT CGGGCACCAC TTCTCCTAGA GTTTTCTTGA ATAACAGATC GCAGAGTTGA GAAACTTGTA TATTCTGTAG GTCATGTCCA CGTTAATTCC ACTTTCCATT TGAAAATGCT ATGTGTTGAG CTAATGGAAG GGCTTGTTTT GAAAGCAGGT ATGATGCACA TTATTTAGAT GAGCTGGCTG GTCTTCAGTT CACAACCGGA ACCTATTTTC GTCTTGCTTC ACATATCAAG CAACTAGCGG GAGACCTTTG CGCAGGTCGG TGTTGCTTCT TCCTTGAGGG TGGTTATGAC TTGAAGGCAC TTTCAAATAG TGTTGTGGAG TCATTCCGTG CTTTTGTCGG AGACAAAAGC ATGGCCCATC GTCTTGACAA CCCAGCAGTG CTGTATGATG AACCCAGTAT ACTGGTAAGG CAAGTTATTG ACGAGGTTAG ATCAATTCAT TCTTTATGAT TCTTATTGTG GTAATGTGAT TTCTACGTTC AACGTAGTCT GACCATTACT ACGGTAAATG GGTGATACAG CTGGAACCTA GAAGCGCAAC TTGATATGTC TGATTTTGTA AATTAAGGAA ATCTGAAAGC AATTCCAGCG ATGCAG |
mRNA UTR + CDS |
| >Mp1g01300.1 GCATTTTCAT GTGAAATCCG AGGTCTTGCA CAATGGCTGC TGCACGAGGA GTGATGAAGG CCAGCGCCAA CCCAGGCTTA GGCCTGGGCC TCGGGCCTGG TGTTCTCCGC CAGCGCCTTG CTCCTACCTT CGGGATTCAT GAGAACATTG CCGGAACTTC TACATTTCAA AGGGGCTACT CTGTACCCAA GTTGTCTTCT TTTTCTGCAA AATGGGGTGA CAATAATTCC TACAGCAAGA GCGGTTCATT ATTCGATGGT GCCAATTTGT CACCGTTGTC AGGACAGTCG AGATCGAAAA GAGAGTTGCT CCTTCCCGTA CCGACGCTCG TGGATTCGAA GGTCATATTT TCTGCTGCAC CAGCGTACGG GCATAACAAG GAGGGTCACC CCGAATGTAA GGCTAGAGTA TCAGCTATAA TGAAAGCTCT CGATCAAGCC GGACTTGCAG ATGAGAGTCG AGCTAAGGAG ATTCTCCGGC TAGATGTGAA AAATATGGCT TCCGTTGAGG AAGTTGCCAC CGTACACAAT ATGAGCTACG TGAAAGGTCT TCGCGAGATT ATGGATAAAG CTCGCGAGGA GAAGCTCATA TTACTCGATT CCACAGGTCC CACATACGCC ACTGAGAATA CTTATAGGGA AGCGATGATG GGAGCAGGAG CTAGCCTGGC AGTTCTTGAC CATGTGGTTG CTGCTTCAAG AGAGACTTCC ACTCCACCAG TTGGTTTCGC TTTGGTGCGA CCTCCAGGTC ACCATGCTAT AGCAACTCGA CCAATGGGCT TCTGTGTATT TGGCAACGTG GCTGTGGCAG CAAGGCATGC GCAGCGAGTG CACGGGCTGC AGCGTGTGTT TATCATTGAC TTTGACGTAC ATCATGGAAA TGGCACCAAT GATATCTTTT ATGAAGATCC AAATGTCTAC TATCTTTCTA CTCATCAGGT TGGTGGGTTT CCCGGAACCG GGAAAATCGA TGAAGTTGGG GAGGGCAAGG GAGAGGGCAC AACTCTTAAT CTTCCCCTAC CGGGGGGCTC CGGGGATGAA GCTATGTCTG CGGTCTTCGA TGAAGTTATT GTTCCTGCAG CGCAACGATT TAAGCCTGAT ATTATTCTTG TCTCTGCTGG GTATGATGCA CATTATTTAG ATGAGCTGGC TGGTCTTCAG TTCACAACCG GAACCTATTT TCGTCTTGCT TCACATATCA AGCAACTAGC GGGAGACCTT TGCGCAGGTC GGTGTTGCTT CTTCCTTGAG GGTGGTTATG ACTTGAAGGC ACTTTCAAAT AGTGTTGTGG AGTCATTCCG TGCTTTTGTC GGAGACAAAA GCATGGCCCA TCGTCTTGAC AACCCAGCAG TGCTGTATGA TGAACCCAGT ATACTGGTAA GGCAAGTTAT TGACGAGGTT AGATCAATTC ATTCTTTATG ATTCTTATTG TGGTAATGTG ATTTCTACGT TCAACGTAGT CTGACCATTA CTACGGTAAA TGGGTGATAC AGCTGGAACC TAGAAGCGCA ACTTGATATG TCTGATTTTG TAAATTAAGG AAATCTGAAA GCAATTCCAG CGATGCAG |
CDS |
| >Mp1g01300.1 ATGGCTGCTG CACGAGGAGT GATGAAGGCC AGCGCCAACC CAGGCTTAGG CCTGGGCCTC GGGCCTGGTG TTCTCCGCCA GCGCCTTGCT CCTACCTTCG GGATTCATGA GAACATTGCC GGAACTTCTA CATTTCAAAG GGGCTACTCT GTACCCAAGT TGTCTTCTTT TTCTGCAAAA TGGGGTGACA ATAATTCCTA CAGCAAGAGC GGTTCATTAT TCGATGGTGC CAATTTGTCA CCGTTGTCAG GACAGTCGAG ATCGAAAAGA GAGTTGCTCC TTCCCGTACC GACGCTCGTG GATTCGAAGG TCATATTTTC TGCTGCACCA GCGTACGGGC ATAACAAGGA GGGTCACCCC GAATGTAAGG CTAGAGTATC AGCTATAATG AAAGCTCTCG ATCAAGCCGG ACTTGCAGAT GAGAGTCGAG CTAAGGAGAT TCTCCGGCTA GATGTGAAAA ATATGGCTTC CGTTGAGGAA GTTGCCACCG TACACAATAT GAGCTACGTG AAAGGTCTTC GCGAGATTAT GGATAAAGCT CGCGAGGAGA AGCTCATATT ACTCGATTCC ACAGGTCCCA CATACGCCAC TGAGAATACT TATAGGGAAG CGATGATGGG AGCAGGAGCT AGCCTGGCAG TTCTTGACCA TGTGGTTGCT GCTTCAAGAG AGACTTCCAC TCCACCAGTT GGTTTCGCTT TGGTGCGACC TCCAGGTCAC CATGCTATAG CAACTCGACC AATGGGCTTC TGTGTATTTG GCAACGTGGC TGTGGCAGCA AGGCATGCGC AGCGAGTGCA CGGGCTGCAG CGTGTGTTTA TCATTGACTT TGACGTACAT CATGGAAATG GCACCAATGA TATCTTTTAT GAAGATCCAA ATGTCTACTA TCTTTCTACT CATCAGGTTG GTGGGTTTCC CGGAACCGGG AAAATCGATG AAGTTGGGGA GGGCAAGGGA GAGGGCACAA CTCTTAATCT TCCCCTACCG GGGGGCTCCG GGGATGAAGC TATGTCTGCG GTCTTCGATG AAGTTATTGT TCCTGCAGCG CAACGATTTA AGCCTGATAT TATTCTTGTC TCTGCTGGGT ATGATGCACA TTATTTAGAT GAGCTGGCTG GTCTTCAGTT CACAACCGGA ACCTATTTTC GTCTTGCTTC ACATATCAAG CAACTAGCGG GAGACCTTTG CGCAGGTCGG TGTTGCTTCT TCCTTGAGGG TGGTTATGAC TTGAAGGCAC TTTCAAATAG TGTTGTGGAG TCATTCCGTG CTTTTGTCGG AGACAAAAGC ATGGCCCATC GTCTTGACAA CCCAGCAGTG CTGTATGATG AACCCAGTAT ACTGGTAAGG CAAGTTATTG ACGAGGTTAG ATCAATTCAT TCTTTATGA |
Protein |
| >Mp1g01300.1 MAAARGVMKA SANPGLGLGL GPGVLRQRLA PTFGIHENIA GTSTFQRGYS VPKLSSFSAK WGDNNSYSKS GSLFDGANLS PLSGQSRSKR ELLLPVPTLV DSKVIFSAAP AYGHNKEGHP ECKARVSAIM KALDQAGLAD ESRAKEILRL DVKNMASVEE VATVHNMSYV KGLREIMDKA REEKLILLDS TGPTYATENT YREAMMGAGA SLAVLDHVVA ASRETSTPPV GFALVRPPGH HAIATRPMGF CVFGNVAVAA RHAQRVHGLQ RVFIIDFDVH HGNGTNDIFY EDPNVYYLST HQVGGFPGTG KIDEVGEGKG EGTTLNLPLP GGSGDEAMSA VFDEVIVPAA QRFKPDIILV SAGYDAHYLD ELAGLQFTTG TYFRLASHIK QLAGDLCAGR CCFFLEGGYD LKALSNSVVE SFRAFVGDKS MAHRLDNPAV LYDEPSILVR QVIDEVRSIH SL |