Mp1g01980
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SMART | SM01329 | Iso_dh_2 |
| NCBIfam | TIGR00175 | isocitrate dehydrogenase (NAD(+)) |
| FunFam | G3DSA:3.40.718.10:FF:000009 | Isocitrate dehydrogenase [NAD] regulatory subunit 1 |
| SUPERFAMILY | SSF53659 | Isocitrate/Isopropylmalate dehydrogenase-like |
| Gene3D | G3DSA:3.40.718.10 | Isopropylmalate Dehydrogenase |
| PANTHER | PTHR11835 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| Pfam | PF00180 | Isocitrate/isopropylmalate dehydrogenase |
| KEGG | K00030 | isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] |
| KOG | KOG0784 | Isocitrate dehydrogenase, gamma subunit; [E] |
| MapolyID | Mapoly0029s0048 | - |
| GO | GO:0004449 | isocitrate dehydrogenase (NAD+) activity |
| GO | GO:0006102 | isocitrate metabolic process |
| GO | GO:0006099 | tricarboxylic acid cycle |
| GO | GO:0005739 | mitochondrion |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
0 core 1 peripheral
Bowman, J. L., et al. (2022)
· Plant Cell review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g01980 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g01980.1 AGCGGAGCCC CCCGAAGGAG GAGGGGAGGG GAGGGGAGGG GGTGGTCAGC GAGCCAGCCC CCGGCGACCG AGGCCCCGCG TCTGAGGGAG GGGGGAGGGA GAGAAGAAGA GAAGGCGAGG GTCGTTCGTT CCGTTCGTCC TCTGGCAGGC CGTGGGGAAT TTTGCATACT TGTCTGCCTC GGCTCGCCAT TCTGCATCGT GTGTGTGTGG GACTGAGGAG GAGCCATGTA CACACCGCAA CCTAAATTTT GGTTCTAGAG CTCGTGGCGT GGATCTGGCT CTCTGGCTCT CGCTTTCACT GACTGACTTC CCGAGGAGTG GATGGTCCCC TCGCTCTGAC ATACCTGAGG TCCAGTGCTG TCGTCTCGTC GCGTCCACTG TCGTGAATTT GTGGGTGCTC GTTTACGTGC CGTCCGCACT CGGGACGCCT CTGGGATGCT GGTTTTGGCT TAGTGGAATC CACGCGCAGG TGCAGACGAT CGGCGAATGG GTTGTTAATC GGGATCGCCC GCTCGCTGCT GATCGATCTG GGGTGTTTTT GGCGGGGAGA GTGTGTGAAT TTCCCGAGTT GCCCATGTGG TCGGGTTCGA GGTGGATAAG AAGCAGGACG AGGGAGGGGG TCATGAGCAG CAATTGCACA ATTTGAGAGC AGAGGATCGG TCGGACGGAG GGAGAGAGAG AGGGAGGGAG GGAGAAGAGG TGCTTGTGGG CAGCAGGCAG AGAGGTTGTA GATACCATGG CTAAGCTCAG GGCTTCTTCT CTTCCTCGTC AGTGGTCACA GCTCAGATCT GCGTACCAGG TCTTGGGCGG ACAATCGAGT CATCCACAGA TCGCTTCGCC CGATTTGCAT TGCTTGGATG GGCAACGGAA GCGCTCCATC ACGTACATGC CCAGGCCTGG GGATGGAACG CCGAGGGCTG TGACACTTTT GCCCGGCGAT GGCATAGGAC CCTTAGTTAC CGGAGCAGTG GTCCAAGTCA TGAAGGCCAT GCACGCCCCT GTGTATTTCG AGACCTACGA AGTATCGGGT AAAATGGACA AGGTGCCGCA AGAGGTTATC GATTCTATCA GGAAAAACAA AGTTTGTCTG AAAGGAGGTC TCGCCACTCC CGTAGGAGGT GGAGTGAGTT CGCTCAACGT CCAGTTGAGG AAGGAATTAG ATTTGTTTGC TTCTTTGGTG CACTGCTTCA ATCTGCCCGG TCTCAAGACA CGCCATGACA ACGTCAACAT TGTGGTAATT CGAGAGAACA CGGAGGGAGA ATATTCTGGA TTGGAGCACG AGGTGGTCCC CGGCGTCGTT GAGAGCCTTA AGGTACGTCG GAAGCGTCAC ATAGCCCGCA AGTGCTGATA GAAGAGGGAG TACTAGAGTA GAAATTCTCA ATTCTGACTT GAGCCCTTTG TAAGCAGAAA CTGCTGGCAA GCTCGTCTGA GACGTATTAA CTGTTGAGGA AGGAATTACA CGAGTTAAAG GCTGGTTTGC TCGCATTTTG TATGCTCATC CAGACGTATT TTTAGGAGAA AAGTTTCAGC GTTAAGCTCT CTCTTTTCTT TCTACACCAT CTCCAAGAAG GCTGTCACTT AGAAATGCAA CAGATTCAGG TCCAGCGTTC GCCACTTCGA GAAGCGGTTT TTTTATGTTC TTACCCTGGC CTAGATCCGA CAGATTTGCA GACTTGCTTG ATCTTTGAGT CTTGTCTAGT ATGAGAAAGA AAAGACGTGA TTTCCAGGAT TTTATGAAGT ATGGGCGGAA CTTAGAAAGT TGATTTATTG AAGTCTGTAA GATACCGTTG ATCAAGTAGC TTCTCGTTGT TTCTGCTTGA ATGTTGTTCT CATTAAGTAG TGTGATACAC TATAAGCGTC TCTCTTCTCA ACTAACTTAA TGAGCACTAA TAGGTGATCA CAAAGTTTTG TTCGGAGCGC ATTGCAAAGT ACGCATTTGA GTATGCTTAC CTGAATGGGA GAAAGACAGT TACGGCAGTC CACAAGGCCA ACATCATGAA GCTTGCAGAT GGACTATTTC TGGAATCATG CCGAGAAATT GCAAAGAATT ATCCCAGTGT CAAGTATAAT GAAGTTATCG TCGACAACTG CTGCATGCAA CTGGTTTCCA AGCCTCAACA ATTTGATGTC ATGGTATGTA ATGAAGAAAT TCATACATCT TGTAGTGTTC GTTTGTGCAT GTTGTGCCTA TCCTCTTCCA TTGCCTAATT TGTGTTTCGA GCAATTTCTT TTATATACAT TGTTATTAGG AAGTAGATTT GAAAGGTTTG GGAATATGGT GCTGAATCTG TTGTGTGATA CACCAAATTT TCGTTGTTCA GGTTACGCCG AACCTGTATG GAACTCTAGT GGCAAATACC GCAGCTGGTA TTGCAGGCGG TACTGGAGTC ATGCCTGGAG GTATGTTTAT TCCAAAGAAT TGTGGCTGTA TGCGAGGGTC ATGTCGATTG ATATTCCTGT TTGGAAAGTT TCGAGTGATC ATGCTTATGA TAACAACGAG CACATAGCAT GTTCAAAATT AAGATCGAGA GAGCGTACCT GTCGGAATAT CATCTCAAAC AGTTTCCTGC TTCGTATTTG GGAGAGATCG GAGAAGCAGG GGTTGATAAT TCTATGGTCA TTCCGATGTA GAGTGATTTT GAGAATGCAC GATGTGTACC TTTGGGAGGT CCTGGAGGTA AGGGTAAGGG TTCAGTGAAA TGAAAGATTT TGAGTGATGA GTATAAGAGC GGCCCTAGGC TTTTGGTAAC ATCTGAATCA GGCAATTTAA CCTGTCTAGA GATCTCAAGT CCTGCATTTA CAGGCTTCGA GCTGTGAGAC TTCATTCGCT TTTACCGGTG GCAGCTTGTT TAGACAGCAG ATTAGTTGTC TTTTATGGCA TAATCGCATA TTCAGCTTAT CTGAATGGAA TCTAGTCACT ACAACACGGA TGTTCTGTAG GACTGTACTT CTGACCTCTT TGTATTCATG CATCGGTCGT CTTTTACTCC TTGCGATGTA GTATATGTCG TCGGAACTTT TGAGACTTGA CACCTAGATC CGCTTTCCGT CTGTCCCTTG CATGCTAAAC CCCTTACAAT CACTGTTTTA TCTGTCGGAT TGCAGTTTCA AGAGTAGAGA ATTTCTTCTT ACCAGAAATA GTCGTTTGAT TGCAGTCCAT ATCACCCTCA AACTTCGGTC ACACTCTGTA GGTCATCGTT ATGTACTTTA TGGTTACTAC TACTGACTGG GTTTCTACAC ACCAAAGAGC TACCTTTTTA CTTATTGGTA GAAAAATTGC TTCTCCGAGA GTTCCTCGTA TTTTAATCGA CGGTAGTATC GCACAGCAAT TTACGTAAAC CTCGAACCTG AGCTGGTCGA GAATAGAATT TGAGCTTACA ACTCACTGAT CATGACGCGT TCGGGAACTC GAGAGAGGTT CCTTTTATAG ATGTTTGGAT TCACTCGACC TATTAATTCT TGGTTCGGAA GGGAAAAGTG GGCTATCAGA CTAACAGTGC GGGGAGGAAG CGAATTAAAA AATGTGATCC TAACCTTTAC TATCTTACCT TAACCCTTAA GCCGTGGGTC TTCAAGCTCC ATCTTCAGGG GTTTCATGTT TAGGCACAAA GTTGAAACCC AAGTACCGGA TGGGTTCCAT TCCTTTGAAA CAACAGAAGA GTCGTAGGTG AACAACTTTG CTACTTGAAT TGTGCGATAT CGGAGACAAA CTTTACGTCC AAATTTTGCG TTCATGCAGC TTCTATGATA GAAAGAGAGG GCCCGTATAC CATGAACTCT TTTACCTTGA TCGTACTTTA AACCTACTCG TGCTTTTTAA GCCTTGTTTC AAATGTCAAC GCTGTTGCCT TCTTCACCGC ATTATATTTC TGGGCTCGTC AAGAGGACAG TTCGACGCTC CTCTGCGGGA GAGACCCTTG TTTTCTCTTA AGTAGTCCTC CTTCTTCATC CCATCGTATT AATTCCATCT ATCACTACTA GCTCTACTGA GACTGTCTTT AGTATATGAC AGGCAATTGC TAATGAGTAG ACCGTCAAAA TCTTTGCAAC GTGCTCTTCT TTTAACTACT TGTTTTGATG GAAATGTTCG GGGAGGCTTA GATTTCATGT TGGGCGGGTT ATTTCGTGTA GTTTGGTTTT CGTTTCTATT TGGTAAATGC AGCTGGTCGA TGGTCTTCAT GAGTTTAGAA TCACGTGTCA TGAAACAAAA TAAAATACAA AAATCCAAGA GTTTTACAGT ATACATGTGG AAAGACATTT GTTAGTTACT TTGAGCGGCT GAATTCAGGC TTGAATGTTA CTGCATGGCA GGAAATGTCG GAGCTGAGCA CGCTATCTTC GAACAAGGAG CTTCAGCTGG AAACGTGGGA AACGAGAAGC TAGTGCTTCA GAAAACTGCA AATCCCACAG CAATTCTGCT GTCATCAGCC ATGCTCTTGC GTCATCTCAA GTTCCCGGCA TTCGCGGATA AGCTAGAGCA AGCAGTCATG GGCGTGATTG CCGAAGGAAA ATACCGTACC AAGGATCTTG GAGGTCTAAG TACTACACAG GAAGTCGTGG ATGCTGTACT TGAAAAGTTG GATGTTTAGC TTGTACTTTG GTTTAGTATC GACATTTTCT TTGTGTATGT ACAGGTGTGC TGGTGCATAC ACCTCCCAAA TTAGATCAAC ATCTCTCTTG CTATGTGGTT CTTGCACCCC TTAGCCCTGC CTGAGTAGCC GGATCCGGGG ATATGATTTT ATAGAAACAT CAGCCTCGAT GTTCAGCGTC CACAATGCAC CTGATTTGAC AAAGCCGTCT TGAAGCGTGC ATCGTACTTT TCGCATGAGT GTACATTGGT GATAACAGTT GATGAAGCAC TTTGTTAGCT CAAGATTACT TTTAGTTTGA TATATTTCAC CAGGACATCG CATCACTGGA AATAAGTGCT GGTGGGCGAA GCCGAGGCCT AGCTGCTGAT CAAATGCTGT GGGTGCTTGC TTCCAGTAAA ATGTGCAGTT TCTGACAATC TAGCTGCGAA GTGGGCTACC TTTGACCCCC TGGGGAATAT TCAAGGAACC CAACTTGTCC GTGTTGTATT TCCGACTTTG TACCTATCGC TTCTGAATTT ATCCAAGACA TGGAACCAGT TTCCGCCCCG AGAGACTTAG CCTCGTTTAC TGTGAGCGTC TGCTTTTTGA TGCTCTCTTA TTCCTTCCTA CTTGCAACAT CTGTACTACG TGTGGCAATT GTTGTTCTGA TGTCGTACAC TGCTCAGTGC ACACGGGCCA CGAAGTACAT CAGAGTCCAG GGTTTCAGTC CTGTATATGT AAACCAAAGG AGCC |
mRNA UTR + CDS |
| >Mp1g01980.1 AGCGGAGCCC CCCGAAGGAG GAGGGGAGGG GAGGGGAGGG GGTGGTCAGC GAGCCAGCCC CCGGCGACCG AGGCCCCGCG TCTGAGGGAG GGGGGAGGGA GAGAAGAAGA GAAGGCGAGG GTCGTTCGTT CCGTTCGTCC TCTGGCAGGC CGTGGGGAAT TTTGCATACT TGTCTGCCTC GGCTCGCCAT TCTGCATCGT GTGTGTGTGG GACTGAGGAG GAGCCATGTA CACACCGCAA CCTAAATTTT GGTTCTAGAG CTCGTGGCGT GGATCTGGCT CTCTGGCTCT CGCTTTCACT GACTGACTTC CCGAGGAGTG GATGGTCCCC TCGCTCTGAC ATACCTGAGG TCCAGTGCTG TCGTCTCGTC GCGTCCACTG TCGTGAATTT GTGGGTGCTC GTTTACGTGC CGTCCGCACT CGGGACGCCT CTGGGATGCT GGTTTTGGCT TAGTGGAATC CACGCGCAGG TGCAGACGAT CGGCGAATGG GTTGTTAATC GGGATCGCCC GCTCGCTGCT GATCGATCTG GGGTGTTTTT GGCGGGGAGA GTGTGTGAAT TTCCCGAGTT GCCCATGTGG TCGGGTTCGA GGTGGATAAG AAGCAGGACG AGGGAGGGGG TCATGAGCAG CAATTGCACA ATTTGAGAGC AGAGGATCGG TCGGACGGAG GGAGAGAGAG AGGGAGGGAG GGAGAAGAGG TGCTTGTGGG CAGCAGGCAG AGAGGTTGTA GATACCATGG CTAAGCTCAG GGCTTCTTCT CTTCCTCGTC AGTGGTCACA GCTCAGATCT GCGTACCAGG TCTTGGGCGG ACAATCGAGT CATCCACAGA TCGCTTCGCC CGATTTGCAT TGCTTGGATG GGCAACGGAA GCGCTCCATC ACGTACATGC CCAGGCCTGG GGATGGAACG CCGAGGGCTG TGACACTTTT GCCCGGCGAT GGCATAGGAC CCTTAGTTAC CGGAGCAGTG GTCCAAGTCA TGAAGGCCAT GCACGCCCCT GTGTATTTCG AGACCTACGA AGTATCGGGT AAAATGGACA AGGTGCCGCA AGAGGTTATC GATTCTATCA GGAAAAACAA AGTTTGTCTG AAAGGAGGTC TCGCCACTCC CGTAGGAGGT GGAGTGAGTT CGCTCAACGT CCAGTTGAGG AAGGAATTAG ATTTGTTTGC TTCTTTGGTG CACTGCTTCA ATCTGCCCGG TCTCAAGACA CGCCATGACA ACGTCAACAT TGTGGTAATT CGAGAGAACA CGGAGGGAGA ATATTCTGGA TTGGAGCACG AGGTGGTCCC CGGCGTCGTT GAGAGCCTTA AGGTGATCAC AAAGTTTTGT TCGGAGCGCA TTGCAAAGTA CGCATTTGAG TATGCTTACC TGAATGGGAG AAAGACAGTT ACGGCAGTCC ACAAGGCCAA CATCATGAAG CTTGCAGATG GACTATTTCT GGAATCATGC CGAGAAATTG CAAAGAATTA TCCCAGTGTC AAGTATAATG AAGTTATCGT CGACAACTGC TGCATGCAAC TGGTTTCCAA GCCTCAACAA TTTGATGTCA TGGTTACGCC GAACCTGTAT GGAACTCTAG TGGCAAATAC CGCAGCTGGT ATTGCAGGCG GTACTGGAGT CATGCCTGGA GGAAATGTCG GAGCTGAGCA CGCTATCTTC GAACAAGGAG CTTCAGCTGG AAACGTGGGA AACGAGAAGC TAGTGCTTCA GAAAACTGCA AATCCCACAG CAATTCTGCT GTCATCAGCC ATGCTCTTGC GTCATCTCAA GTTCCCGGCA TTCGCGGATA AGCTAGAGCA AGCAGTCATG GGCGTGATTG CCGAAGGAAA ATACCGTACC AAGGATCTTG GAGGTCTAAG TACTACACAG GAAGTCGTGG ATGCTGTACT TGAAAAGTTG GATGTTTAGC TTGTACTTTG GTTTAGTATC GACATTTTCT TTGTGTATGT ACAGGTGTGC TGGTGCATAC ACCTCCCAAA TTAGATCAAC ATCTCTCTTG CTATGTGGTT CTTGCACCCC TTAGCCCTGC CTGAGTAGCC GGATCCGGGG ATATGATTTT ATAGAAACAT CAGCCTCGAT GTTCAGCGTC CACAATGCAC CTGATTTGAC AAAGCCGTCT TGAAGCGTGC ATCGTACTTT TCGCATGAGT GTACATTGGT GATAACAGTT GATGAAGCAC TTTGTTAGCT CAAGATTACT TTTAGTTTGA TATATTTCAC CAGGACATCG CATCACTGGA AATAAGTGCT GGTGGGCGAA GCCGAGGCCT AGCTGCTGAT CAAATGCTGT GGGTGCTTGC TTCCAGTAAA ATGTGCAGTT TCTGACAATC TAGCTGCGAA GTGGGCTACC TTTGACCCCC TGGGGAATAT TCAAGGAACC CAACTTGTCC GTGTTGTATT TCCGACTTTG TACCTATCGC TTCTGAATTT ATCCAAGACA TGGAACCAGT TTCCGCCCCG AGAGACTTAG CCTCGTTTAC TGTGAGCGTC TGCTTTTTGA TGCTCTCTTA TTCCTTCCTA CTTGCAACAT CTGTACTACG TGTGGCAATT GTTGTTCTGA TGTCGTACAC TGCTCAGTGC ACACGGGCCA CGAAGTACAT CAGAGTCCAG GGTTTCAGTC CTGTATATGT AAACCAAAGG AGCC |
CDS |
| >Mp1g01980.1 ATGGCTAAGC TCAGGGCTTC TTCTCTTCCT CGTCAGTGGT CACAGCTCAG ATCTGCGTAC CAGGTCTTGG GCGGACAATC GAGTCATCCA CAGATCGCTT CGCCCGATTT GCATTGCTTG GATGGGCAAC GGAAGCGCTC CATCACGTAC ATGCCCAGGC CTGGGGATGG AACGCCGAGG GCTGTGACAC TTTTGCCCGG CGATGGCATA GGACCCTTAG TTACCGGAGC AGTGGTCCAA GTCATGAAGG CCATGCACGC CCCTGTGTAT TTCGAGACCT ACGAAGTATC GGGTAAAATG GACAAGGTGC CGCAAGAGGT TATCGATTCT ATCAGGAAAA ACAAAGTTTG TCTGAAAGGA GGTCTCGCCA CTCCCGTAGG AGGTGGAGTG AGTTCGCTCA ACGTCCAGTT GAGGAAGGAA TTAGATTTGT TTGCTTCTTT GGTGCACTGC TTCAATCTGC CCGGTCTCAA GACACGCCAT GACAACGTCA ACATTGTGGT AATTCGAGAG AACACGGAGG GAGAATATTC TGGATTGGAG CACGAGGTGG TCCCCGGCGT CGTTGAGAGC CTTAAGGTGA TCACAAAGTT TTGTTCGGAG CGCATTGCAA AGTACGCATT TGAGTATGCT TACCTGAATG GGAGAAAGAC AGTTACGGCA GTCCACAAGG CCAACATCAT GAAGCTTGCA GATGGACTAT TTCTGGAATC ATGCCGAGAA ATTGCAAAGA ATTATCCCAG TGTCAAGTAT AATGAAGTTA TCGTCGACAA CTGCTGCATG CAACTGGTTT CCAAGCCTCA ACAATTTGAT GTCATGGTTA CGCCGAACCT GTATGGAACT CTAGTGGCAA ATACCGCAGC TGGTATTGCA GGCGGTACTG GAGTCATGCC TGGAGGAAAT GTCGGAGCTG AGCACGCTAT CTTCGAACAA GGAGCTTCAG CTGGAAACGT GGGAAACGAG AAGCTAGTGC TTCAGAAAAC TGCAAATCCC ACAGCAATTC TGCTGTCATC AGCCATGCTC TTGCGTCATC TCAAGTTCCC GGCATTCGCG GATAAGCTAG AGCAAGCAGT CATGGGCGTG ATTGCCGAAG GAAAATACCG TACCAAGGAT CTTGGAGGTC TAAGTACTAC ACAGGAAGTC GTGGATGCTG TACTTGAAAA GTTGGATGTT TAG |
Protein |
| >Mp1g01980.1 MAKLRASSLP RQWSQLRSAY QVLGGQSSHP QIASPDLHCL DGQRKRSITY MPRPGDGTPR AVTLLPGDGI GPLVTGAVVQ VMKAMHAPVY FETYEVSGKM DKVPQEVIDS IRKNKVCLKG GLATPVGGGV SSLNVQLRKE LDLFASLVHC FNLPGLKTRH DNVNIVVIRE NTEGEYSGLE HEVVPGVVES LKVITKFCSE RIAKYAFEYA YLNGRKTVTA VHKANIMKLA DGLFLESCRE IAKNYPSVKY NEVIVDNCCM QLVSKPQQFD VMVTPNLYGT LVANTAAGIA GGTGVMPGGN VGAEHAIFEQ GASAGNVGNE KLVLQKTANP TAILLSSAML LRHLKFPAFA DKLEQAVMGV IAEGKYRTKD LGGLSTTQEV VDAVLEKLDV |