Mp1g04040



Description

Annotation

Database ID Description
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
PANTHER PTHR46565 COLD SHOCK DOMAIN PROTEIN 2
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00313 'Cold-shock' DNA-binding domain
SMART SM00343 c2hcfinal6
SMART SM00357 csp_8
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
ProSiteProfiles PS51857 Cold-shock (CSD) domain profile.
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
Gene3D G3DSA:2.40.50.140 -
FunFam G3DSA:2.40.50.140:FF:000382 Cold shock protein 1
PRINTS PR00050 Cold shock protein signature
ProSitePatterns PS00352 Cold-shock (CSD) domain signature.
Gene3D G3DSA:4.10.60.10 -
Pfam PF00098 Zinc knuckle
CDD cd04458 CSP_CDS
KEGG K18754 protein lin-28
KEGG K03704 cold shock protein
KOG KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J]
KOG KOG4400 E3 ubiquitin ligase interacting with arginine methyltransferase; N-term missing; C-term missing; [O]
MapolyID Mapoly0005s0203 -
GO GO:0003676 nucleic acid binding
GO GO:0008270 zinc ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpCSD transcription factor, CSD Published

Associated Literature (AI-based literature mining, Beta-version)

Core transcription factor that, with MpHD9 and MpERF20, expanded its direct targets to cytokinin/nutrient responses during terrestrialization (gene regulatory network co-option).

1 core 0 peripheral

Dong, Y., et al. (2024) · Nature Plants  research experimental subject
Core transcription factor that, with MpHD9 and MpERF20, expanded its direct targets to cytokinin/nutrient responses during terrestrialization (gene regulatory network co-option).

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04040.1 chr1:4451495..4454199 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g04040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g04040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.