Mp1g04480



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50827 DDT domain profile.
SUPERFAMILY SSF46689 Homeodomain-like
Pfam PF02791 DDT domain
Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain
Pfam PF15613 Williams-Beuren syndrome DDT (WSD), D-TOX E motif
CDD cd00086 homeodomain
Coils Coil Coil
PANTHER PTHR36968 HOMEOBOX-DDT DOMAIN PROTEIN RLT2
SMART SM00389 HOX_1
SMART SM00571 testlast3
ProSiteProfiles PS51913 HARE-type HTH domain profile.
Gene3D G3DSA:1.10.10.60 -
Pfam PF15612 WSTF, HB1, Itc1p, MBD9 motif 1
ProSiteProfiles PS50071 'Homeobox' domain profile.
Pfam PF00046 Homeodomain
KOG KOG0484 Transcription factor PHOX2/ARIX, contains HOX domain; C-term missing; [K]
KOG KOG2891 Surface glycoprotein; N-term missing; [R]
KOG KOG4815 Muscular protein implicated in muscular dystrophy phenotype; C-term missing; [R]
KOG KOG1473 Nucleosome remodeling factor, subunit NURF301/BPTF; C-term missing; [BK]
MapolyID Mapoly0005s0159 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpDDT1 transcription factor, HD, homeodomain protein Published
MpHD1 transcription factor, HD, homeodomain protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04480.1 chr1:4832725..4845506 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g04480 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g04480 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.