Mp1g05560



Description

Annotation

Database ID Description
FunFam G3DSA:1.25.40.180:FF:000029 Nuclear cap-binding protein
FunFam G3DSA:1.25.40.180:FF:000040 Nuclear cap-binding protein subunit 1
PANTHER PTHR12412 CAP BINDING PROTEIN
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02854 MIF4G domain
Pfam PF09090 MIF4G like
Gene3D G3DSA:1.25.40.180 -
SUPERFAMILY SSF48371 ARM repeat
SMART SM00543 if4_15
Pfam PF09088 MIF4G like
KEGG K12882 nuclear cap-binding protein subunit 1
KOG KOG1104 Nuclear cap-binding complex, subunit NCBP1/CBP80; [A]
MapolyID Mapoly0005s0051 -
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0000339 RNA cap binding
GO GO:0005846 nuclear cap binding complex
GO GO:0005515 protein binding
GO GO:0006406 mRNA export from nucleus
GO GO:0016070 RNA metabolic process
GO GO:0003729 mRNA binding
GO GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO GO:0005845 obsolete mRNA cap binding complex

Nomenclature

Gene symbol Product Transcript ID Status
MpCBP80 RNA-binding protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05560.1 chr1:6010133..6019191 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05560 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05560 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.