Mp1g05970



Description

Annotation

Database ID Description
PANTHER PTHR35460 TRNA LIGASE 1
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
Pfam PF08302 Fungal tRNA ligase phosphodiesterase domain
MapolyID Mapoly0005s0012 -
GO GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO GO:0003972 RNA ligase (ATP) activity
GO GO:0005524 ATP binding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Target of MpmiR11865*, encoding a tRNA ligase 1 protein. Its expression inversely correlates with the miRNA by RT-qPCR, with the cleavage site located in the 3'-UTR.

1 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Target of MpmiR11865*, encoding a tRNA ligase 1 protein. Its expression inversely correlates with the miRNA by RT-qPCR, with the cleavage site located in the 3'-UTR.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05970.1 chr1:6326599..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.2 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.3 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05970.4 chr1:6326601..6341604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05970 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05970 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.