Mp1g06200



Description

Annotation

Database ID Description
SMART SM00648 surpneu2
Pfam PF07713 Protein of unknown function (DUF1604)
ProSiteProfiles PS50128 SURP motif repeat profile.
Gene3D G3DSA:1.10.10.790 Surp module
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR13384 G PATCH DOMAIN-CONTAINING PROTEIN 1
ProSiteProfiles PS50174 G-patch domain profile.
SUPERFAMILY SSF109905 Surp module (SWAP domain)
Pfam PF01805 Surp module
Coils Coil Coil
KEGG K13123 G patch domain-containing protein 1
KOG KOG2138 Predicted RNA binding protein, contains G-patch domain; [A]
MapolyID Mapoly0043s0012 -
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0006396 RNA processing
GO GO:0003676 nucleic acid binding
GO GO:0006397 mRNA processing

Nomenclature

Gene symbol Product Transcript ID Status
MpTGH G PATCH DOMAIN-CONTAINING PROTEIN 1 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g06200.1 chr1:6717621..6728201 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g06200.2 chr1:6717774..6728201 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g06200 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g06200 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.