Mp1g06870



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF01535 PPR repeat
SUPERFAMILY SSF48452 TPR-like
PANTHER PTHR47447 OS03G0856100 PROTEIN
Pfam PF12854 PPR repeat
Pfam PF13041 PPR repeat family
Pfam PF13812 Pentatricopeptide repeat domain
NCBIfam TIGR00756 pentatricopeptide repeat
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
KOG KOG4422 Uncharacterized conserved protein; C-term missing; [S]
MapolyID Mapoly0043s0079 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_31 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g06870.1 chr1:7398001..7402441 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g06870 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g06870 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.