Mp1g06880



Description

Annotation

Database ID Description
PANTHER PTHR46009 VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
Pfam PF04652 Vta1 like
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF18097 Vta1 C-terminal domain
Gene3D G3DSA:1.25.40.270 -
Gene3D G3DSA:1.20.5.420 Immunoglobulin FC, subunit C
KEGG K12199 vacuolar protein sorting-associated protein VTA1
KOG KOG0917 Uncharacterized conserved protein; [S]
MapolyID Mapoly0043s0080 -
GO GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway
GO GO:0005771 multivesicular body

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Tested as a co-localization and interaction partner of MpSPI PBW; yeast two-hybrid showed a strong interaction that could not be independently confirmed.

0 core 2 peripheral

Koebke, E., et al. (2022) · Frontiers in Plant Science  research experimental comparator
Tested as a co-localization and interaction partner of MpSPI PBW; yeast two-hybrid showed a strong interaction that could not be independently confirmed.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
Negative control in BiFC; its co-expression yields no YFP signal, confirming assay specificity.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g06880.1 chr1:7404473..7409613 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g06880 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g06880 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.