Mp1g09820



Description

Annotation

Database ID Description
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
Pfam PF01535 PPR repeat
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
NCBIfam TIGR00756 pentatricopeptide repeat
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF13812 Pentatricopeptide repeat domain
Pfam PF12854 PPR repeat
Pfam PF13041 PPR repeat family
SUPERFAMILY SSF48452 TPR-like
PANTHER PTHR46128 MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1
KOG KOG4422 Uncharacterized conserved protein; C-term missing; [S]
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0096s0019 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_51 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g09820.1 chr1:10397948..10402399 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g09820 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g09820 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.