Mp1g10870



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR34281 PROTEIN EARLY FLOWERING 3
KEGG K12125 protein EARLY FLOWERING 3
MapolyID Mapoly0014s0139 -
GO GO:2000028 regulation of photoperiodism, flowering

Nomenclature

Gene symbol Product Transcript ID Status
MpELF3 A subunit of evening complex Published

Associated Literature (AI-based literature mining, Beta-version)

Evening-complex component required to bridge the MpLUX-MpEFL interaction. The three proteins are proposed to form a trimer, and MpELF3 shows overlapping spatial expression with MpLUX and MpEFL.

2 core 2 peripheral

Lagercrantz, U., et al. (2022) · PLoS ONE  research experimental subject
Evening-complex component required to bridge the MpLUX-MpEFL interaction. The three proteins are proposed to form a trimer, and MpELF3 shows overlapping spatial expression with MpLUX and MpEFL.
Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
Single ELF3 homologue with evening-phased circadian expression; promoter:LUC shows rhythmic expression in neutral day and constant light, localized to meristematic regions.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research sequence background
Reported as a homolog present in the M. polymorpha genome; not experimentally characterized here.
Lagercrantz, U., et al. (2021) · New Phytologist  research experimental background
MpELF3 EARLY FLOWERING 3 evening-complex gene

Transcript models

Transcript ID Location Sequences Extract region
Mp1g10870.1 chr1:11405239..11413029 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g10870 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g10870 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.