Mp1g12530
Description
Annotation
| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SMART | SM00360 | rrm1_1 |
| Gene3D | G3DSA:3.30.70.330 | - |
| PANTHER | PTHR48025 | OS02G0815200 PROTEIN |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. |
| Pfam | PF00076 | RNA recognition motif |
| CDD | cd00590 | RRM_SF |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD |
| KOG | KOG0127 | Nucleolar protein fibrillarin NOP77 (RRM superfamily); C-term missing; [A] |
| MapolyID | Mapoly0019s0023 | - |
| GO | GO:0005634 | nucleus |
| GO | GO:0003729 | mRNA binding |
| GO | GO:0003723 | RNA binding |
| GO | GO:0003676 | nucleic acid binding |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
UVB-induced DEG, unknown function (annotation).
0 core 1 peripheral
Clayton, W. A., et al. (2018)
· Plant Journal research experimental background
UVB-induced DEG, unknown function (annotation).
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp1g12530 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g12530.1 TCAGGGCTCA AGACTAGCAC CTCCGGGTCT GTGCGGATGT ATCATCGAAC TTGAGCGCTG CATCCCCGAA TGGGTGAGAG CGCGATGACA GCAGACGACC GGGAGAGAAT CGGGCAGTCG AGTCGGTCGG ACGCACAGAA TGAGTCGTAC GGGGCAGGAG AACGTGTTGT GGTCGAACGC AACGAGCCGC TGGCCTAGAG GTCAGTGCGT CGTCAGAGAG AGCGAGCGAG CAACGATTTT GGGCTGAGAT GTCGAAGCAC TCGTAGCTCG CGGAGCAGGG ATGGTAGCCG CCGTGCAATG GAGCACACTC GGGCCTCCTG CGGGACTGAC GTCGAGGACG ACGAGGCCTT TGGAAGTCAG TGGCACGAGG TACACCAACA ATCCATGGAC CCCTCGCAAT TGCGGCATCT CGGCCATGTC GAGCGAGAAC GACGCCCGGA GCACGAGTTC CGGACATTTT GCCGGTTTAT CGTCCCTGAA GGAACAGCTG CTCAGCGGCC GCGAGGCAAA GCAAAGCGGA CTGCCGACGG CGAAGCAGCA GCAGGGGCGG CGGACGCCTC CTGAGACCGA GAAGGCTCCT GCCCGGGAGC CGCCGCCGTC GATCAGGCAA CCGACGGCGA ACGGCAAAGA CTCCGTGGCT CTTCTGGTGG CCAATCTGCC CAAGGAGCTG ACGAAGGCGG AGTTCGAGTC GCTGATGCTC AAGGATCCTC AAGTCGCTCG CTGCACGTAC CTGACCCACA AAAGTGGCGA TTGTCGTAGC TACGGATTCT GCGAGCTCCG GCCGGGAGCG GATGTCACCG CGGCCATCGA ACTCCTCAAC CGGCAGACGG TCGGCGGCCG GCTGCTCAGA GCTTCCATCG CCACCGGCAA GAAGGAATCC CTGGAGTCTA CCCCGAGGAT TTCTTCTCGA GGAGACGCCC GAACAAAGGC GGCGACGACG ACGACGACGA CGAGTGTGAA GAACTTCAAA GCGAGTCCGA ATCCGCGAGA TGAACGGGAG AGTGACGGTG GAGCTAAATC ACTCGGGGGA GCCTCGAATT CGACTGCCGG AGGACGCCAA TCTTCGCAGC AGCAGCAGCA GCAGCTAGGC ACCGTTACTC GATTGTCTCG AGCGGGAGCC GGACCCTCGA AGCCCCCGGG CGAGGCTTCC CAGTCGGGCT CCAATGCTCC ACTGTCCGGA CAGAAGGTGC TGGACGCGTT GGAAAGGTTC GCCCGACAAC GGAAAGCTAT CGGAGAAACT CCCGGCAATC GTCGAGTTTC GTCGGATTTC AAAGCCGAGA CGGATGGTAC CGATGAGAGT GAGCCGGAGC CCGTCCAAGT GAGACCCGAT TGGCCCGATA GAATCGCGTC TCTTGAGGCC CAGATTCAGC ATTTGAGGCG ATTGTGACTC ATTTATTCCT CGTCCCTTCA CTCGCCGTCT TTCCCTTCAG TCCAGACTCT GAGACTCCCG CTCTTCGTTC ACTTTCAATT CAACTTGGCC TCTGTATGGG ACGCTGGTTC TATTTAATAA CCCGAGACCT TGGTACTCTC GTCCAGCTGC AAGGGACATT AACAACACTC AACTGTCAAT ATCCACTGTC CTGGGCTGGT GGAACCTACA AGGGCGAAGG GACAGCCCCG TTCTACTGCA ACTGCATTGT AGGTAGTGTT TCTAGGCACC AGTGGCAAGT GCTTTTGCTG CGAGATTACC AATTCCATCT TCATGTTCTG AATAAGTTCA CATCTCTGAC GCGTGGTCGA AGATTGTACA TATGTGTTGT TTCAATTCAA ATAAAAGATC CGCTTTACTA ATGTGAGTGG |
mRNA UTR + CDS |
| >Mp1g12530.1 TCAGGGCTCA AGACTAGCAC CTCCGGGTCT GTGCGGATGT ATCATCGAAC TTGAGCGCTG CATCCCCGAA TGGGTGAGAG CGCGATGACA GCAGACGACC GGGAGAGAAT CGGGCAGTCG AGTCGGTCGG ACGCACAGAA TGAGTCGTAC GGGGCAGGAG AACGTGTTGT GGTCGAACGC AACGAGCCGC TGGCCTAGAG GTCAGTGCGT CGTCAGAGAG AGCGAGCGAG CAACGATTTT GGGCTGAGAT GTCGAAGCAC TCGTAGCTCG CGGAGCAGGG ATGGTAGCCG CCGTGCAATG GAGCACACTC GGGCCTCCTG CGGGACTGAC GTCGAGGACG ACGAGGCCTT TGGAAGTCAG TGGCACGAGG TACACCAACA ATCCATGGAC CCCTCGCAAT TGCGGCATCT CGGCCATGTC GAGCGAGAAC GACGCCCGGA GCACGAGTTC CGGACATTTT GCCGGTTTAT CGTCCCTGAA GGAACAGCTG CTCAGCGGCC GCGAGGCAAA GCAAAGCGGA CTGCCGACGG CGAAGCAGCA GCAGGGGCGG CGGACGCCTC CTGAGACCGA GAAGGCTCCT GCCCGGGAGC CGCCGCCGTC GATCAGGCAA CCGACGGCGA ACGGCAAAGA CTCCGTGGCT CTTCTGGTGG CCAATCTGCC CAAGGAGCTG ACGAAGGCGG AGTTCGAGTC GCTGATGCTC AAGGATCCTC AAGTCGCTCG CTGCACGTAC CTGACCCACA AAAGTGGCGA TTGTCGTAGC TACGGATTCT GCGAGCTCCG GCCGGGAGCG GATGTCACCG CGGCCATCGA ACTCCTCAAC CGGCAGACGG TCGGCGGCCG GCTGCTCAGA GCTTCCATCG CCACCGGCAA GAAGGAATCC CTGGAGTCTA CCCCGAGGAT TTCTTCTCGA GGAGACGCCC GAACAAAGGC GGCGACGACG ACGACGACGA CGAGTGTGAA GAACTTCAAA GCGAGTCCGA ATCCGCGAGA TGAACGGGAG AGTGACGGTG GAGCTAAATC ACTCGGGGGA GCCTCGAATT CGACTGCCGG AGGACGCCAA TCTTCGCAGC AGCAGCAGCA GCAGCTAGGC ACCGTTACTC GATTGTCTCG AGCGGGAGCC GGACCCTCGA AGCCCCCGGG CGAGGCTTCC CAGTCGGGCT CCAATGCTCC ACTGTCCGGA CAGAAGGTGC TGGACGCGTT GGAAAGGTTC GCCCGACAAC GGAAAGCTAT CGGAGAAACT CCCGGCAATC GTCGAGTTTC GTCGGATTTC AAAGCCGAGA CGGATGGTAC CGATGAGAGT GAGCCGGAGC CCGTCCAAGT GAGACCCGAT TGGCCCGATA GAATCGCGTC TCTTGAGGCC CAGATTCAGC ATTTGAGGCG ATTGTGACTC ATTTATTCCT CGTCCCTTCA CTCGCCGTCT TTCCCTTCAG TCCAGACTCT GAGACTCCCG CTCTTCGTTC ACTTTCAATT CAACTTGGCC TCTGTATGGG ACGCTGGTTC TATTTAATAA CCCGAGACCT TGGTACTCTC GTCCAGCTGC AAGGGACATT AACAACACTC AACTGTCAAT ATCCACTGTC CTGGGCTGGT GGAACCTACA AGGGCGAAGG GACAGCCCCG TTCTACTGCA ACTGCATTGT AGGTAGTGTT TCTAGGCACC AGTGGCAAGT GCTTTTGCTG CGAGATTACC AATTCCATCT TCATGTTCTG AATAAGTTCA CATCTCTGAC GCGTGGTCGA AGATTGTACA TATGTGTTGT TTCAATTCAA ATAAAAGATC CGCTTTACTA ATGTGAGTGG |
CDS |
| >Mp1g12530.1 ATGGTAGCCG CCGTGCAATG GAGCACACTC GGGCCTCCTG CGGGACTGAC GTCGAGGACG ACGAGGCCTT TGGAAGTCAG TGGCACGAGG TACACCAACA ATCCATGGAC CCCTCGCAAT TGCGGCATCT CGGCCATGTC GAGCGAGAAC GACGCCCGGA GCACGAGTTC CGGACATTTT GCCGGTTTAT CGTCCCTGAA GGAACAGCTG CTCAGCGGCC GCGAGGCAAA GCAAAGCGGA CTGCCGACGG CGAAGCAGCA GCAGGGGCGG CGGACGCCTC CTGAGACCGA GAAGGCTCCT GCCCGGGAGC CGCCGCCGTC GATCAGGCAA CCGACGGCGA ACGGCAAAGA CTCCGTGGCT CTTCTGGTGG CCAATCTGCC CAAGGAGCTG ACGAAGGCGG AGTTCGAGTC GCTGATGCTC AAGGATCCTC AAGTCGCTCG CTGCACGTAC CTGACCCACA AAAGTGGCGA TTGTCGTAGC TACGGATTCT GCGAGCTCCG GCCGGGAGCG GATGTCACCG CGGCCATCGA ACTCCTCAAC CGGCAGACGG TCGGCGGCCG GCTGCTCAGA GCTTCCATCG CCACCGGCAA GAAGGAATCC CTGGAGTCTA CCCCGAGGAT TTCTTCTCGA GGAGACGCCC GAACAAAGGC GGCGACGACG ACGACGACGA CGAGTGTGAA GAACTTCAAA GCGAGTCCGA ATCCGCGAGA TGAACGGGAG AGTGACGGTG GAGCTAAATC ACTCGGGGGA GCCTCGAATT CGACTGCCGG AGGACGCCAA TCTTCGCAGC AGCAGCAGCA GCAGCTAGGC ACCGTTACTC GATTGTCTCG AGCGGGAGCC GGACCCTCGA AGCCCCCGGG CGAGGCTTCC CAGTCGGGCT CCAATGCTCC ACTGTCCGGA CAGAAGGTGC TGGACGCGTT GGAAAGGTTC GCCCGACAAC GGAAAGCTAT CGGAGAAACT CCCGGCAATC GTCGAGTTTC GTCGGATTTC AAAGCCGAGA CGGATGGTAC CGATGAGAGT GAGCCGGAGC CCGTCCAAGT GAGACCCGAT TGGCCCGATA GAATCGCGTC TCTTGAGGCC CAGATTCAGC ATTTGAGGCG ATTGTGA |
Protein |
| >Mp1g12530.1 MVAAVQWSTL GPPAGLTSRT TRPLEVSGTR YTNNPWTPRN CGISAMSSEN DARSTSSGHF AGLSSLKEQL LSGREAKQSG LPTAKQQQGR RTPPETEKAP AREPPPSIRQ PTANGKDSVA LLVANLPKEL TKAEFESLML KDPQVARCTY LTHKSGDCRS YGFCELRPGA DVTAAIELLN RQTVGGRLLR ASIATGKKES LESTPRISSR GDARTKAATT TTTTSVKNFK ASPNPRDERE SDGGAKSLGG ASNSTAGGRQ SSQQQQQQLG TVTRLSRAGA GPSKPPGEAS QSGSNAPLSG QKVLDALERF ARQRKAIGET PGNRRVSSDF KAETDGTDES EPEPVQVRPD WPDRIASLEA QIQHLRRL |