Mp1g13160



Description

Annotation

Database ID Description
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
PANTHER PTHR46598 BNAC05G43320D PROTEIN
NCBIfam TIGR00756 pentatricopeptide repeat
Pfam PF13041 PPR repeat family
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Pfam PF13812 Pentatricopeptide repeat domain
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF01535 PPR repeat
Pfam PF12854 PPR repeat
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0019s0086 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_16 Pentatricopeptide repeat proteins Published

Associated Literature (AI-based literature mining, Beta-version)

Pentatricopeptide repeat proteins; Genome paper MpPPR_16: Mapoly0019s0086.1 (from nomenclature)

0 core 1 peripheral

Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DEG, chloroplastic polycistronic transcript processing (annotation).

Transcript models

Transcript ID Location Sequences Extract region
Mp1g13160.1 chr1:13528776..13533252 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g13160.2 chr1:13528747..13533413 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g13160 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g13160 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.