Mp1g13750



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR36319 PROTEIN GIGANTEA
PRINTS PR02081 Protein GIGANTEA signature
MapolyID Mapoly0019s0145 -
GO GO:0005634 nucleus
GO GO:2000028 regulation of photoperiodism, flowering
GO GO:0006950 response to stress
GO GO:0042752 regulation of circadian rhythm

Nomenclature

Gene symbol Product Transcript ID Status
MpGI Orthologue of GIGANTEA, circadian gene. Published

Associated Literature (AI-based literature mining, Beta-version)

Orthologue of GIGANTEA, circadian gene.; Knockout of either the GIGANTEA(GI) or FLAVIN-BINDING KELCH REPEAT F-BOX1 (FKF1) orthologue completely abolishes the long-day-dependent growth-phase transition in M. polymorpha. Overexpression of either gene promotes growth-phase transition, even under short-day conditions. Introduction of the GI orthologue partially rescues the late-flowering phenotype of the Arabidopsis thaliana gi mutant. (from nomenclature)

2 core 2 peripheral

Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
Single GIGANTEA gene showing circadian rhythmicity; interacts with the sole ZTL-family member MpFKF and affects photoperiodic reproduction. Promoter:LUC rhythmic in meristematic regions.
Kubota A, Kita S, Ishizaki K, Nishihama R, Yamato KT, Kohchi T. (2014) · Nat Commun  research experimental subject
GIGANTEA ortholog; knockout abolished the long-day-dependent vegetative-to-reproductive growth-phase transition and overexpression promoted it even under short days. The Marchantia GI also partially rescued the Arabidopsis gi late-flowering phenotype.
Kanesaka, Y., et al. (2023) · Frontiers in Plant Science  research citation background
Cited from prior work showing a diel expression pattern like its Arabidopsis orthologue, implicating it in daylength response.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research sequence background
Reported as a homolog in the M. polymorpha genome, noted as a large protein of unclear biochemical function; not experimentally characterized here.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g13750.1 chr1:14026453..14039665 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g13750 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g13750 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.