Mp1g15230



Description

Annotation

Database ID Description
Pfam PF10250 GDP-fucose protein O-fucosyltransferase
FunFam G3DSA:3.40.50.11350:FF:000011 O-fucosyltransferase 28
PANTHER PTHR31741 OS02G0726500 PROTEIN-RELATED
CDD cd11299 O-FucT_plant
KEGG K23280 rhamnogalacturonan I rhamnosyltransferase [EC:2.4.1.351]
MapolyID Mapoly0033s0138 -
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpRRT1 RG-I rhamnosyltransferases Provisional

Associated Literature (AI-based literature mining, Beta-version)

Genome locus of MpRRT1, the central gene of this study; its cDNA was amplified by PCR and expressed as recombinant protein in N. benthamiana. The encoded enzyme shows RG-I rhamnosyltransferase activity, localizes at the cis-Golgi, and CRISPR knockouts were generated.

2 core 2 peripheral

Kang HS, Tong X, Mariette A, Leong M, Beahan C, Flores-Sandoval E, Pedersen GB, Rautengarten C, Bowman JL, Ebert B, Bacic A, Doblin MS, Persson S, Lampugnani ER. (2025) · The Plant journal : for cell and molecular biology  research experimental subject
M. polymorpha RRT (RG-I rhamnosyltransferase) ortholog identified and cloned into the study's cDNA library.
Wachananawat, B., et al. (2020) · Frontiers in Plant Science  research experimental subject
Genome locus of MpRRT1, the central gene of this study; its cDNA was amplified by PCR and expressed as recombinant protein in N. benthamiana. The encoded enzyme shows RG-I rhamnosyltransferase activity, localizes at the cis-Golgi, and CRISPR knockouts were generated.
Pfeifer, L., et al. (2022) · Journal of Experimental Botany  research citation background
Review on bryophyte cell walls: cites MpRRT1 as an RG-I rhamnosyltransferase characterized by heterologous expression in N. benthamiana.
Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review

Transcript models

Transcript ID Location Sequences Extract region
Mp1g15230.1 chr1:15962091..15967106 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g15230.2 chr1:15959275..15967084 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g15230.3 chr1:15959280..15967085 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g15230 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g15230 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.