Mp1g16900



Description

Annotation

Database ID Description
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
PANTHER PTHR43245 BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Pfam PF02453 Reticulon
Gene3D G3DSA:3.40.50.720 -
Pfam PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family
ProSiteProfiles PS50845 Reticulon domain profile.
KEGG K23558 plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418]
KOG KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases; [IE]
KOG KOG1792 Reticulon; [U]
MapolyID Mapoly0001s0030 -
GO GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity
GO GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO GO:0006694 steroid biosynthetic process

Nomenclature

Gene symbol Product Transcript ID Status
MpDFR-like2 Secondary metabolism enzyme Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g16900.1 chr1:17694187..17701305 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g16900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g16900 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.