Mp1g17180



Description

Annotation

Database ID Description
Pfam PF00155 Aminotransferase class I and II
Gene3D G3DSA:3.40.640.10 -
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1
PANTHER PTHR43795 BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED
ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
CDD cd00609 AAT_like
SUPERFAMILY SSF53383 PLP-dependent transferases
PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature
KOG KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins; [T]
MapolyID Mapoly0001s0058 -
GO GO:0003824 catalytic activity
GO GO:0009058 biosynthetic process
GO GO:0006520 amino acid metabolic process
GO GO:0008483 transaminase activity
GO GO:0030170 pyridoxal phosphate binding

Nomenclature

Gene symbol Product Transcript ID Status
MpACS-RELATE 1-aminocyclopropane-1-carboxylate synthase 2, ethylene related Published
MpACS2 1-aminocyclopropane-1-carboxylate synthase 2, ethylene related Published
Mapoly0001s0058 (Mp1g17180) was originally described as MpACS-RELATE in the genome paper. Later, it was described as MpACS2 in Li et al. 2020.

Associated Literature (AI-based literature mining, Beta-version)

ACC synthase paralog; with MpACS1 governs ACC production; ethylene-independent ACC signaling.

1 core 2 peripheral

Li, D., et al. (2020a) · Nature Plants  research experimental subject
ACC synthase paralog; with MpACS1 governs ACC production; ethylene-independent ACC signaling.
Tong, M., et al. (2022) · Molecular Plant  research citation background
Review: ACC synthase-like gene cited as having ACS activity.
Li, D., et al. (2022a) · New Phytologist  research experimental comparator
ACC synthase; ACC-biosynthesis context.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g17180.1 chr1:17999541..18008208 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g17180 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g17180 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.