Mp1g18110



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF16488 Argonaute linker 2 domain
Pfam PF16487 Mid domain of argonaute
FunFam G3DSA:3.30.420.10:FF:000013 protein argonaute 10-like
Coils Coil Coil
CDD cd02846 PAZ_argonaute_like
Gene3D G3DSA:3.30.420.10 -
Pfam PF02170 PAZ domain
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
SMART SM01163 DUF1785_2
SUPERFAMILY SSF101690 PAZ domain
ProSiteProfiles PS50821 PAZ domain profile.
Gene3D G3DSA:2.170.260.10 paz domain
FunFam G3DSA:3.40.50.2300:FF:000110 Argonaute 10
Pfam PF16486 N-terminal domain of argonaute
SMART SM00949 PAZ_2_a_3
Pfam PF02171 Piwi domain
ProSiteProfiles PS50822 Piwi domain profile.
Pfam PF08699 Argonaute linker 1 domain
SMART SM00950 Piwi_a_2
FunFam G3DSA:2.170.260.10:FF:000001 Protein argonaute-2
CDD cd04657 Piwi_ago-like
Gene3D G3DSA:3.40.50.2300 -
SUPERFAMILY SSF53098 Ribonuclease H-like
KEGG K11593 eukaryotic translation initiation factor 2C
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; [J]
MapolyID Mapoly0001s0149 -
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0005515 protein binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAGO1 miRNA biogenesis protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

ARGONAUTE1; together with its regulatory miRNA miR11707, mediates high-temperature acclimation in M. polymorpha (analysed via cellular and MpAGO1-IP sRNA profiles across temperatures).

2 core 4 peripheral

Hong, S.-F., et al. (2024) · Plant & Cell Physiology  research experimental subject
ARGONAUTE1; together with its regulatory miRNA miR11707, mediates high-temperature acclimation in M. polymorpha (analysed via cellular and MpAGO1-IP sRNA profiles across temperatures).
Tsuzuki, M., et al. (2016) · Plant and Cell Physiology  research experimental subject
ARGONAUTE1; sRNA effector identified in the small-RNA profile.
Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)
Lin, S.-S., et al. (2018) · New Phytologist  review citation background
ARGONAUTE1; sRNA effector (reviewed).
Hung, Y.-L., et al. (2024) · Plant & Cell Physiology  research experimental comparator
ARGONAUTE1; sRNA effector.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g18110.1 chr1:18887478..18900785 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g18110 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g18110 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.