Mp1g19590



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR31072 TRANSCRIPTION FACTOR TCP4-RELATED
ProSiteProfiles PS51370 R domain profile.
Pfam PF03634 TCP family transcription factor
ProSiteProfiles PS51369 TCP domain profile.
KOG KOG0307 Vesicle coat complex COPII, subunit SEC31; N-term missing; [U]
MapolyID Mapoly0001s0298 -
GO GO:0043565 sequence-specific DNA binding
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005634 nucleus

Nomenclature

Gene symbol Product Transcript ID Status
MpTCP2 bHLH transcription factor Published

Associated Literature (AI-based literature mining, Beta-version)

bHLH transcription factor; Genome paper TCP2: Mapoly0001s0298.1 (from nomenclature)

0 core 3 peripheral

Karaaslan, E. S. h., et al. (2020) · Nature Plants  research experimental comparator
TCP-C TCP gene (Mp1g19590); not upregulated in tcp1 (no compensation).
Busch, A., et al. (2019) · New Phytologist  research sequence comparator
TCP-C class TCP gene (single copy); phylogenetic comparison.
Flores-Sandoval, E., et al. (2018b) · Frontiers in Plant Science  research experimental background
Class II TCP TF listed in DEG/co-expression tables (logFC 11.89, logCPM 5.02).

Transcript models

Transcript ID Location Sequences Extract region
Mp1g19590.1 chr1:20553351..20559202 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g19590.2 chr1:20553436..20559220 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g19590 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g19590 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.