Mp1g20040



Description

Annotation

Database ID Description
SMART SM00380 rav1_2
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF54171 DNA-binding domain
PRINTS PR00367 Ethylene responsive element binding protein signature
FunFam G3DSA:3.30.730.10:FF:000001 Ethylene-responsive transcription factor 2
PANTHER PTHR31677 AP2 DOMAIN CLASS TRANSCRIPTION FACTOR
Coils Coil Coil
Pfam PF00847 AP2 domain
Gene3D G3DSA:3.30.730.10 AP2/ERF domain
CDD cd00018 AP2
ProSiteProfiles PS51032 AP2/ERF domain profile.
KEGG K09286 EREBP-like factor
MapolyID Mapoly0001s0341 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpERF1 transcription factor, AP2/ERF Published
MpERF24 transcription factor, AP2/ERF Provisional
MpERF1 is assigned to Mapoly0001s0341 (Mp1g20040) in the Table S7 (List of TF in Mp) of the genome paper, which is sequentially numbered in the ascending order of the Mapoly gene number. Whereas in Table S8, it is assigned to Mapoly0068s0088 (Mp7g09350) based on the homology to AtERF1. For consistency with all the ERF-family genes (MpERF1-MpERF23) defined in Table S7, we recommend to use MpERF1 to denote Mapoly0001s0341 (Mp1g20040) and MpERF15 to denote Mapoly0068s0088 (Mp7g09350). Note also that 'MpERF1' referred to in Li et al. (Nature Plants, 2020, doi:10.1038/s41477-020-00784-y) corresponds to MpERF15 in this database.

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, AP2/ERF; Genome paper Mapoly0068s0088 (from nomenclature)

0 core 3 peripheral

Takahashi G, Yamaya S, Romani F, Bonter I, Ishizaki K, Shimamura M, Kiyosue T, Haseloff J, Hirakawa Y. (2026) · Current biology : CB  research experimental comparator
One of three class VIII AP2/ERF genes (Mp1g20040); its coding sequence was introduced in comparison experiments.
Takaoka, Y., et al. (2024) · PNAS Nexus  research experimental tool
MpEIN3-mediated marker gene; expression was activated by peptide 4 with OPDA, used as a readout of EIN3-branch activity.
Katayose, A., et al. (2021) · Plant and Cell Physiology  research experimental background
MpERF1 ethylene-induced; suppressed by STS

Transcript models

Transcript ID Location Sequences Extract region
Mp1g20040.1 chr1:21017546..21019742 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g20040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g20040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.