Mp1g21450



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.20.58.1880 -
Gene3D G3DSA:1.10.10.60 -
PANTHER PTHR47340 DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN
Coils Coil Coil
SMART SM00717 sant
CDD cd00167 SANT
ProSiteProfiles PS51293 SANT domain profile.
ProSiteProfiles PS50090 Myb-like domain profile.
Pfam PF00249 Myb-like DNA-binding domain
KOG KOG1878 Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains; C-term missing; [K]
KOG KOG1194 Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains; N-term missing; C-term missing; [K]
MapolyID Mapoly0001s0480 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRR-MYB1 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

Salinity-responsive MYB-related transcription factor, the single strongly downregulated TF by RNA-Seq (logFC -4.86, FDR 0.0405). qRT-PCR validation was inconsistent with RNA-Seq, indicating marginal reliability.

1 core 0 peripheral

Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity-responsive MYB-related transcription factor, the single strongly downregulated TF by RNA-Seq (logFC -4.86, FDR 0.0405). qRT-PCR validation was inconsistent with RNA-Seq, indicating marginal reliability.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21450.1 chr1:22438723..22447933 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.2 chr1:22438723..22447945 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.3 chr1:22438723..22447933 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.4 chr1:22438723..22446765 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g21450 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g21450 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.