Mp1g21580



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18787 SF2_C_DEAD
FunFam G3DSA:3.40.50.300:FF:000322 probable ATP-dependent RNA helicase DDX23
Pfam PF00270 DEAD/DEAH box helicase
Pfam PF00271 Helicase conserved C-terminal domain
Coils Coil Coil
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile.
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
FunFam G3DSA:3.40.50.300:FF:000520 probable ATP-dependent RNA helicase DDX23
SMART SM00490 helicmild6
PANTHER PTHR47958 ATP-DEPENDENT RNA HELICASE DBP3
CDD cd17945 DEADc_DDX23
SMART SM00487 ultradead3
KEGG K12858 ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13]
KOG KOG0333 U5 snRNP-like RNA helicase subunit; [A]
KOG KOG0835 Cyclin L; N-term missing; [R]
MapolyID Mapoly0001s0493 -
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0003724 RNA helicase activity
GO GO:0071013 catalytic step 2 spliceosome
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSMA1 ATP-dependent RNA helicase; U5 snRNP-like RNA helicase Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21580.1 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.2 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.3 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.4 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g21580 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g21580 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.