Mp1g25160



Description

Annotation

Database ID Description
CDD cd00590 RRM_SF
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
Pfam PF00076 RNA recognition motif
Pfam PF17177 Pentacotripeptide-repeat region of PRORP
Pfam PF13041 PPR repeat family
NCBIfam TIGR00756 pentatricopeptide repeat
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
SMART SM00360 rrm1_1
Gene3D G3DSA:3.30.70.330 -
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF81901 HCP-like
Pfam PF01535 PPR repeat
SUPERFAMILY SSF54928 RNA-binding domain, RBD
PANTHER PTHR47939 MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE
KEGG K17710 pentatricopeptide repeat domain-containing protein 1
KOG KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily); C-term missing; [A]
KOG KOG4318 Bicoid mRNA stability factor; C-term missing; [A]
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0061s0009 -
GO GO:0003676 nucleic acid binding
GO GO:0003723 RNA binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_63 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g25160.1 chr1:26436768..26444062 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g25160 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g25160 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.