Mp1g27170



Description

Annotation

Database ID Description
FunFam G3DSA:3.30.40.10:FF:000187 E3 ubiquitin-protein ligase ATL6
ProSiteProfiles PS50089 Zinc finger RING-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF13639 Ring finger domain
CDD cd16461 RING-H2_EL5-like
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SUPERFAMILY SSF57850 RING/U-box
SMART SM00184 ring_2
PANTHER PTHR46539 E3 UBIQUITIN-PROTEIN LIGASE ATL42
KEGG K10664 E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27]
KOG KOG4628 Predicted E3 ubiquitin ligase; N-term missing; [O]
MapolyID Mapoly0002s0161 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACRE132 PAMP-responsive gene Provisional

Associated Literature (AI-based literature mining, Beta-version)

PAMP-responsive gene (from nomenclature)

0 core 3 peripheral

Kulshrestha, S., et al. (2022) · Journal of Experimental Botany  review citation background
ATL31 E3 ligase
Michavila S, Espinosa-Cores L, Kneeshaw S, Torres S, Siroka J, Zamarreno AM, Gonzalez-Zuloaga M, Garcia-Mina JM, Novak O, Solano R, Gimenez-Ibanez S. (2026) · Plant & cell physiology  research experimental background
Rapidly responsive defense gene detected in this paper's transcriptome.
Iwakawa, H., et al. (2021) · Plant & Cell Physiology  research experimental background
Avr/Cf-Elicited gene; immune-marker readout.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g27170.1 chr1:28352614..28357839 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g27170 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g27170 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.