Mp2g00710



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
FunFam G3DSA:2.130.10.10:FF:000440 Bromodomain and WD repeat-containing protein
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
CDD cd00200 WD40
Coils Coil Coil
SUPERFAMILY SSF47370 Bromodomain
Gene3D G3DSA:2.130.10.10 -
PANTHER PTHR16266 WD REPEAT DOMAIN 9
Pfam PF00439 Bromodomain
SMART SM00320 WD40_4
Pfam PF00400 WD domain, G-beta repeat
SMART SM00297 bromo_6
ProSiteProfiles PS50014 Bromodomain profile.
Gene3D G3DSA:1.20.920.10 -
SUPERFAMILY SSF50978 WD40 repeat-like
KOG KOG0644 Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; C-term missing; [R]
KOG KOG0644 Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; N-term missing; [R]
MapolyID Mapoly0028s0080 -
GO GO:0005634 nucleus
GO GO:0008360 regulation of cell shape
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0007010 cytoskeleton organization
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpBromo4 Chromatin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

A pre-ARF-related gene investigated as the evolutionary precursor lineage of ARFs. CRISPR/Cas9 Mpphip mutants were generated and showed no genetic or functional resemblance to MpARF1 or MpARF3, and structural alignment of its DD-AD region was compared with ARF.

1 core 0 peripheral

Hernández-García, J., et al. (2024a) · Nature Communications  research experimental subject
A pre-ARF-related gene investigated as the evolutionary precursor lineage of ARFs. CRISPR/Cas9 Mpphip mutants were generated and showed no genetic or functional resemblance to MpARF1 or MpARF3, and structural alignment of its DD-AD region was compared with ARF.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g00710.1 chr2:850553..868891 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00710.2 chr2:850553..868891 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00710.3 chr2:850553..862167 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g00710 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g00710 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.