Mp2g00890



Description

Annotation

Database ID Description
SMART SM00353 finulus
Pfam PF14215 bHLH-MYC and R2R3-MYB transcription factors N-terminal
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00010 Helix-loop-helix DNA-binding domain
Gene3D G3DSA:4.10.280.10 -
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
PANTHER PTHR46266 TRANSCRIPTION FACTOR TT8
KOG KOG1318 Helix loop helix transcription factor EB; N-term missing; [K]
MapolyID Mapoly0028s0062 -
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH2 transcription factor, bHLH Published

Associated Literature (AI-based literature mining, Beta-version)

Salinity stress-responsive bHLH transcription factor in M. polymorpha, identified as strongly upregulated by RNA-Seq (logFC 4.24, FDR 0.0365). qRT-PCR validation was inconsistent with RNA-Seq, suggesting possible false positivity at the chosen threshold.

1 core 1 peripheral

Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity stress-responsive bHLH transcription factor in M. polymorpha, identified as strongly upregulated by RNA-Seq (logFC 4.24, FDR 0.0365). qRT-PCR validation was inconsistent with RNA-Seq, suggesting possible false positivity at the chosen threshold.
Jeon, H.-W., et al. (2024) · New Phytologist  research experimental comparator
bHLH TF (Mp2g00890); MpNPR-dependent gene.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g00890.1 chr2:1114896..1119642 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00890.2 chr2:1114896..1119642 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g00890 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g00890 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.