Mp2g02920



Description

Annotation

Database ID Description
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
CDD cd03249 ABC_MTABC3_MDL1_MDL2
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00005 ABC transporter
ProSitePatterns PS00211 ABC transporters family signature.
CDD cd18577 ABC_6TM_Pgp_ABCB1_D1_like
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile.
SMART SM00382 AAA_5
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
SUPERFAMILY SSF90123 ABC transporter transmembrane region
CDD cd18578 ABC_6TM_Pgp_ABCB1_D2_like
FunFam G3DSA:3.40.50.300:FF:000251 ABC transporter B family member 19
Gene3D G3DSA:3.40.50.300 -
Pfam PF00664 ABC transporter transmembrane region
FunFam G3DSA:3.40.50.300:FF:000205 ABC transporter B family member 4
PANTHER PTHR24222 ABC TRANSPORTER B FAMILY
KEGG K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]
KEGG K17907 autophagy-related protein 9
KOG KOG0055 Multidrug/pheromone exporter, ABC superfamily; [Q]
MapolyID Mapoly0075s0053 -
GO GO:0055085 transmembrane transport
GO GO:0042626 ATPase-coupled transmembrane transporter activity
GO GO:0140359 ABC-type transporter activity
GO GO:0005524 ATP binding
GO GO:0005887 plasma membrane
GO GO:0016887 ATP hydrolysis activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpABCB1 Auxin transport Published

Associated Literature (AI-based literature mining, Beta-version)

Auxin transport; Genome paper MpABCB1: Mapoly0075s0053 MpABCB2: Mapoly0075s0052 MpABCB3: Mapoly0037s0014 MpABCB4: Mapoly0182s0009 MpABCB5: Mapoly0115s0036 (from nomenclature)

0 core 1 peripheral

Csicsely, E., et al. (2025) · The Plant Journal  research experimental background
Auxin transporter (Mp2g02920); DE in Mpdcl1a.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g02920.1 chr2:3739632..3749040 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g02920 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g02920 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.