Mp2g03810
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR21230 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
| Coils | Coil | Coil |
| Gene3D | G3DSA:1.20.5.110 | - |
| ProSiteProfiles | PS50192 | t-SNARE coiled-coil homology domain profile. |
| Pfam | PF03908 | Sec20 |
| SUPERFAMILY | SSF58038 | SNARE fusion complex |
| CDD | cd15861 | SNARE_SNAP25N_23N_29N_SEC9N |
| SMART | SM00397 | tSNARE_6 |
| FunFam | G3DSA:1.20.5.110:FF:000021 | novel plant SNARE 11 |
| KEGG | K08494 | novel plant SNARE |
| KOG | KOG1666 | V-SNARE; [U] |
| MapolyID | Mapoly0031s0037 | - |
| GO | GO:0000149 | SNARE binding |
| GO | GO:0031902 | late endosome membrane |
| GO | GO:0005794 | Golgi apparatus |
| GO | GO:0005789 | endoplasmic reticulum membrane |
| GO | GO:0031201 | SNARE complex |
| GO | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
| GO | GO:0005484 | SNAP receptor activity |
| GO | GO:0012507 | ER to Golgi transport vesicle membrane |
| GO | GO:0006906 | vesicle fusion |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpNPSN1 | Ortholog of Arabidopsis NPSN1 genes | Published |
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis NPSN1 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpNPSN1 driven by the cauliflower mosaic virus 35S promoter is localized to the plasma membrane. (from nomenclature)
0 core 1 peripheral
Iwakawa, H., et al. (2021)
· Plant & Cell Physiology research experimental tool
Plasma-membrane marker (Citrine-MpNPSN1) for transient-expression imaging.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp2g03810 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp2g03810.1 GGGGGCCGCG GGGGCCGAGG GCGGAGCGCG GGCGCGGAGC GGAGCAGAGG ATTTGAGTTG TGTCCTGCTG GGGCTGCCAT GGAGTGGGGG CATTCTCTCT CCTTCTCCAG TGTCTGCAGG TGGTGCCTGC TGCTGCCGTG ACGCACGCAT TGCGAGGCCA GGAGGACGAG GACGAGGACT GAGAGAGAGA GAGAGAGACT CTTTCTCCGC CCGCGGCCGA AGAACTTTCT TTGCCGTTGG TTGATGGCAG CGACGAGCAG CAGCAGCAGC AGAGCAGCAG CAGGATAGAA GACGACGGGC ATACAGAGTC AGATAGACAG AGATAGAGAT TTAGAAAGAA GACGAAGAAG AAGAAGAAGA GGACAGGCGG TGGAACGGAG GCCGAGAAGG TGGGAGAAGG CAAAGGGGGG GGAGGGCATT GCCGAGTTTC GTCGTCGCCT GCGCTCGAGC GGGGGTAGAA ATTTGGCGAG ACGAGGATCC GTGGGGGCCG CGAGCTTGGG TGGGTGGGGA TGTCGTGTTA ATGTAGGTAG GTCAGCCCGG TGTCGGATAT GCGCTAGACT CGACTCCCAT GTTCTGCCCT CCCGCTTCCG CCTTCCCTTC GTCCCCGGGT GGTAAATTTC ATTTGACGAC TCGGCAATTT ATCCGCATTT GCTCGGCTCG GTCGGTAGTG GTGGCAGAGT CCGGTAGGCC CGTAGAGCAT CGGGAATCTA GTCCTTCGGT CCAACTTTCG TCAAGGCGAT ACAGATCTGT GCCGATCCGC ACAGAAGGAA GCGAGGAGTT CTAGAGGGGC ACGCTGGGGT TAGAGAAGAA TTCCGGGCGC TTTGTGCGCT TCGACGAAGT GCCATCGCCT TCTCGGCAGA TGGCCTCCCA AGGTCCCGAG CTCAGTCCTA CAGCGGCCAG CCTCGATGGC CAGCTTCAAG ATTTGTTCCG CGCACTCTCG TATGTCCCTT CCCTTGTTTT CCCTTGTGTG TCAACGCAAT GATGTCCGTG GTTGGTCTGT TCTGGCTTTG AGTGCATTGA CTGCTAATGT CGGTAGTCGC TGCGAAACGT TCTCCGCATT GATTATTATT TAACCACTCG GCCTTCCTCT CGGCCAGTCC TACTTTCTCT TCAGCTCACG TGATTGAGCA CCCTGTTCCG TGTGGATGGT TGCCCGCTCG TCTGAACGAA AGAAAGTTGT TGTTTCTAGT CAATTGGTTG CCACCTCTCA TTCTGCAATA CGAGTAACGC TCGAGTAATC CAAGAACTTG GGAACATATT TAGCCCTGTG AATCACCAAT TAGCGACCTT ATAGTTGTGC ACGCCGATGT GAACTTGGTG CTCTTAACTT CTCAATCTGA TAGTTCCCTC TCTCCCGCGC TTCTCATGAT GGGGGGCAAT CTATGGCATT CTCCTTTATT CTGTGTTTTC GTTCGACATT GCCTCTGGCA GTCAAGCTTT TCGTTGTCGA TGTAAATGAT CCACTTTTCC GCTCAATATC TTCCACGATA CGCAGCGGAG GAGTCGATCC TTGGCATTGC CAACGTAGTC CGTCGCCTTT CTCTTGCTCC CGGGGACTGC TCTATGTCGT GGCCCAATTG ACTTTCTATC TCAACTCTCG AGCGTAATTC GATCAGAGTC GGTACTTTTG GCCCGAGGTT TTTTTCTGAT TGGCATGTCT ATCCATTCTC ATCTAGCTTA AGCCTGAGAT CTTACTGATC AAAAGTATGG TATAACTATG GTTTCATAAA TCCATTCTAA CATTGTTCTT TATCTGTCTC GTTATGGCAA ACAGGACTGG TTTTCAAAAA TTGGACAAGG TTAAAGATGC CAACCGCCAA AGCAAGCAAC TTGAGGAACT TACCGCGAAA ATGCGGGAAG CGAAACGGTG TGTTCCACAT TTCAACTTTC AGAGAGAATT TTAGCATTGT TTTTCAAATG TAGGGTAATC GGAGGCATTG CTTCCTGTTT ATCGAATGAG GTTTGGATCT ACAGATGACG ATTTAGGCTT AACTGAGCTA TGGGTGTGTA CTGGGGAGAA GATTGGAGCT TTCTTCGTCG TTCTGACACC AGGAATGTAA TTAGTTTTGT ATCAATCCTC TTGGTGTAAT TCGACCTTCA GCTAGTCAGC TGGGTGCCTG CAAACTGTGC TTGGCAGTTG GTCTACCCTT CCGTTCCACC TGGTTATATG AGTCGACATA TCTGGTTTTG ATTCCAATGC AGTTACCATC AATGCATTTG CTGATCACGT ACCTTTTAAA TGCCACGAAG GATAAGTCTC TGCAATTTAT ATCCTCTTGT CTTTCTGGCA GGCTTGAAGG TAGCCTCCGA AAATTTCTGC TAACGCTAGT GCTACAGTCG TCGATTCAGT CTCAATCGAT CTTCCCCTTT TAACTGTGAT CCCGAGGGAA TCATTAGCAT CCCAGGACTC GTGCGAGCCC AAAAGCTCTC CAGCTCTCTT GACATGCTTT GAGCGCCCCC AATTTTCTTC TTTTCAGATG ATTCGTTTCT CTCGATTTTA AAGCGCCAAA GCCAGCGTAT TCTTTCATGA ATCCGGTTTA CTCTTTGCTC GAAGGAAGGA GTCGACTACT TTGTTCTGGA CCGTTCCTCT AATCTTTGAC CTGAAGATTT CCCCTTTATT TCTACTAGAC GAACACTGGC GCTTGCTAGC TCGCTGTGAT TAGTCTTCTT CAGGGCTTTA GGGAGCAAAT TTGCGAGGTT TTCTCATCGG AGTTTTTCCA TTTGATGTGT TTTTCTAGAC ACCCTGCTCT ATGCAGTAAA GGATTTCCCT AGCACACTCC CGTCCTTCCC TCGCAGTCCT ATCAACTGTC AACCATTGTA TCTCGTCTTT GTTTACTGGG CGTGAGGACT ATTCGTAAAT ACTTATTCAG GCATTTTCAC TCGAGCAAGG ACGATTGCAA AACCTTCCCA TCGCAGCTAC TCTCTATGTG ATAAAGAATT CAAATTGTTA GATGTTACTC GCTACTTATT CCAAAAATTA TTGAGATCTA CATAAGCCAA CGATCGAAGT GACTTGTTAG GGGTTTGTCG ACATTTTTTA AAAGTGTCGT TCTTTTGTTT GCAGACTCAT TAAGGATTTC GATCGAGAGA TCAAGGACGA AGAGTCACGA AACTCGCCAG AAGTCAACAA GCAGTTGAAT GAGAAGAAGC AAGCTCTGGT GATTTTCGAA TAAATGAAGA TGTTTTCAGT GTTTCCCAAT GGTTGTCTAT ATCACTAATT TAAATTGTGA GCTGCAATGG AATTGCAGCT CTCTATTGCT GTCTATCTAT GTACTAAAGA TCTTTTTCGG TCTCCTTGCA GATCAAAGAA CTCAACTCCT ATGTCGCTCT TCGCAAAACG TATGTTCGTC TTTACCAGAA CCCTCGGTTG CGCTGAGGCC TGATTCAAAC TCAACTTTCT TTTATGTGTC AATTTTTAGA GTTAACGATC TGACATGTTT TGCATCAACA GCTACACGAG CGCCCTTGGT GGAGGTAGAA ACGAGCTTCT TGATGGAGGC AAAGGAGAGC CTTTGATTGA TGACGGTGTG AAGTTGGCAT CAAGTGAGTC CTCTTGTTTA TCTTTACATG TACATCGTGA TAATTCAAGT GCTTGTTAAA TCTGCACGAC CGAGTACTGA GTACCGGTCG ATTTGAACAC CGTATACTAT TTTGAATTGC TGTAGTAGAG TAAAAGTTTG ATACAATTTG GGCTGAATGC AGCAATGACG AATCAACAAC TCATGGATAC CGGAAGAAAG CAGATGGACG AAACAGACCA AACAATCGAA CGGTCTAAGA AGGCAAGGCT GTAATTTTGA TATATCACTG ACCTAGCATA TAACATGCCC CAGCATGTGG TTTGTGTTTG TCAGTTGGAC GTGGTTAAAC TTTCGTTCTT ACGGCATCAC GTTCTGATAC AGGTTGTCCA AGATACCATC AATATTGGTG AACAAACTGC TTTGACACTG AAGGCTCAGG TAATTATGTC GGGAAATATT CGTTCCTCCC TAAAAAATTT GTTTCTTGTG ACATACGTAG GATAACAGTC CTAACGCGAG GTTTGCAAGG ACGTCGTCTG GTTTGGCAGG ATGTGATGTC CAGATTGTAT CATCATGTTT ACAGCCTAGT ATAACCTCTC AATGTTTCAT CCATCCTTTC AGACAGAGCA AATGGGCAGA ATTGTGAATG AATTGGACAC CATCCAGTTT TCAATCAAGA AGGCCTCTCA ACTGGTGAAA GAAATCGGTA GGCAGGTAAG ATCTGCTTCT CATCTCCTTA TCTGTTGACC TGCGCTTTTA TCAATTCCAA TTTCCTATGT AACCCAGCAT GTTCGAGATG AATCCAGGTG GAAAATTTCT GTCAGTTTCC CGTCTTTCTT CTCTGTACTA ACCATGCTGT TTATCGTTGG TGTACAGCTA GCCACAGATA AATGCATTAT GTTCTTCCTC TTTTTGATTG TTTGTGGAGT AATTGCCATC ATCATTGTTA AGGTAACAGG CTCATTCTCA GTTCCTTGAT AGCGATATCT GGTAGTCTTT TTTAATAAAC GCATTATTGT TGATTCCACT TTCCTTTCAA GGTCGCCATG AAACTGACTC CTATATAAGC GTACTCATTC TTATCTCAGT ATTTTTTGGT CAGAAATTTG GCACCTTCCT CGCCCTTACT GAAGATAACT AAGATTATTT GATGATTTTT TCCAGGTTGT TAACCCAAAA AACAAGAATA TTGTCGATAT CCCTGGGCTG GCACCCCCGG CAAGTACTAC TACCAACAGA CGGCTCTTGC TCGCTTTGTT GGAGTCCTAG GTGGACAAAA GGAGTAAGGG CCTTGGTCCC TCTTGAACGA TTCTTTGGAG GGCTCAAAAG CGTGAGCACG TGACGACTAC ACTCCAGGGC ATCAGTTGAT GATGGATGTT CTTGTATAGG CTAGGCTGGT CGCTTGCCAC TTACCATCAG TGCCCTCACT AATTTCAATC TTGGATGGTG TCCATTATTC TTTGGGGTTT TACTGCCTTG TATTGTCATC CTTCTCCTAG TGAGATGGGG ATAGCTTGGT GGTTTGGGTA AATTGGCTTT CTTGCAATTC CGATTCTCTT CAGCTCGAGA ACGCCTTCTT CGAGAATCTC ATTCCCCCTT GCCCAAACCC TTTGTATTAG TGCATAAAAG CCCGCTAGGT AGGTTTTAAA AATTTTAATG GAAACAACAG TTTCTGTGCA TGTATGAAGG CGAAGTATTC TAGCAAACTA TGCTTGAACT TCCTGGACTG GGCATGTAAG TCTCCTGAGC CTCGATGCCA GCCAGTCTCT TGGAACTCCG GGAAGGGTGA TGGCCCCCCA GTTGGACCTG TTGACTTGTG CGACACCTTG AAGAGCTGAT TTTGTATCTA GGTTTCTTCT TATATGCAGC TCCAGACTCT CTGCGCAGCA GCAGGAGTTG CCTGAAGGTA TGATGCATAA CTAGTTTGCT CTTTCCTCTA GAGCTTGCTT AGTGGCAGGC AGTTTTATCC AGATGGACAA CTTGCGTCTG GTGTTGATTA CTTCCAGGAG AGATCCAACA ACAGGAGTAC CACTTCGCGA CCAATGTGGG GTGACTTCAC ATTTTTTATC TCAGTGACTC TGGGACATAT ATAGATAGGG ACATGTGAGA TTGTCTACCA AACAACATTG TTTCAGGATC AAGGTTTATA TAAGTAGATT TGATTCATGT GGATTGTTTC AGTGTTAACG AAGTCGACCA GATTTGAAGT GAGTACTGGT GCAATGGATA GCTGCAACTG CGAAATTATG TCTTCTGAAA AGCTGTGATT CACAACTACT TGGAAGAGGC CAGTGCCG |
mRNA UTR + CDS |
| >Mp2g03810.1 GGGGGCCGCG GGGGCCGAGG GCGGAGCGCG GGCGCGGAGC GGAGCAGAGG ATTTGAGTTG TGTCCTGCTG GGGCTGCCAT GGAGTGGGGG CATTCTCTCT CCTTCTCCAG TGTCTGCAGG TGGTGCCTGC TGCTGCCGTG ACGCACGCAT TGCGAGGCCA GGAGGACGAG GACGAGGACT GAGAGAGAGA GAGAGAGACT CTTTCTCCGC CCGCGGCCGA AGAACTTTCT TTGCCGTTGG TTGATGGCAG CGACGAGCAG CAGCAGCAGC AGAGCAGCAG CAGGATAGAA GACGACGGGC ATACAGAGTC AGATAGACAG AGATAGAGAT TTAGAAAGAA GACGAAGAAG AAGAAGAAGA GGACAGGCGG TGGAACGGAG GCCGAGAAGG TGGGAGAAGG CAAAGGGGGG GGAGGGCATT GCCGAGTTTC GTCGTCGCCT GCGCTCGAGC GGGGGTAGAA ATTTGGCGAG ACGAGGATCC GTGGGGGCCG CGAGCTTGGG TGGGTGGGGA TGTCGTGTTA ATGTAGGTAG GTCAGCCCGG TGTCGGATAT GCGCTAGACT CGACTCCCAT GTTCTGCCCT CCCGCTTCCG CCTTCCCTTC GTCCCCGGGT GGTAAATTTC ATTTGACGAC TCGGCAATTT ATCCGCATTT GCTCGGCTCG GTCGGTAGTG GTGGCAGAGT CCGGTAGGCC CGTAGAGCAT CGGGAATCTA GTCCTTCGGT CCAACTTTCG TCAAGGCGAT ACAGATCTGT GCCGATCCGC ACAGAAGGAA GCGAGGAGTT CTAGAGGGGC ACGCTGGGGT TAGAGAAGAA TTCCGGGCGC TTTGTGCGCT TCGACGAAGT GCCATCGCCT TCTCGGCAGA TGGCCTCCCA AGGTCCCGAG CTCAGTCCTA CAGCGGCCAG CCTCGATGGC CAGCTTCAAG ATTTGTTCCG CGCACTCTCG ACTGGTTTTC AAAAATTGGA CAAGGTTAAA GATGCCAACC GCCAAAGCAA GCAACTTGAG GAACTTACCG CGAAAATGCG GGAAGCGAAA CGACTCATTA AGGATTTCGA TCGAGAGATC AAGGACGAAG AGTCACGAAA CTCGCCAGAA GTCAACAAGC AGTTGAATGA GAAGAAGCAA GCTCTGATCA AAGAACTCAA CTCCTATGTC GCTCTTCGCA AAACCTACAC GAGCGCCCTT GGTGGAGGTA GAAACGAGCT TCTTGATGGA GGCAAAGGAG AGCCTTTGAT TGATGACGGT GTGAAGTTGG CATCAACAAT GACGAATCAA CAACTCATGG ATACCGGAAG AAAGCAGATG GACGAAACAG ACCAAACAAT CGAACGGTCT AAGAAGGTTG TCCAAGATAC CATCAATATT GGTGAACAAA CTGCTTTGAC ACTGAAGGCT CAGACAGAGC AAATGGGCAG AATTGTGAAT GAATTGGACA CCATCCAGTT TTCAATCAAG AAGGCCTCTC AACTGGTGAA AGAAATCGGT AGGCAGCTAG CCACAGATAA ATGCATTATG TTCTTCCTCT TTTTGATTGT TTGTGGAGTA ATTGCCATCA TCATTGTTAA GGTTGTTAAC CCAAAAAACA AGAATATTGT CGATATCCCT GGGCTGGCAC CCCCGGCAAG TACTACTACC AACAGACGGC TCTTGCTCGC TTTGTTGGAG TCCTAGGTGG ACAAAAGGAG TAAGGGCCTT GGTCCCTCTT GAACGATTCT TTGGAGGGCT CAAAAGCGTG AGCACGTGAC GACTACACTC CAGGGCATCA GTTGATGATG GATGTTCTTG TATAGGCTAG GCTGGTCGCT TGCCACTTAC CATCAGTGCC CTCACTAATT TCAATCTTGG ATGGTGTCCA TTATTCTTTG GGGTTTTACT GCCTTGTATT GTCATCCTTC TCCTAGTGAG ATGGGGATAG CTTGGTGGTT TGGGTAAATT GGCTTTCTTG CAATTCCGAT TCTCTTCAGC TCGAGAACGC CTTCTTCGAG AATCTCATTC CCCCTTGCCC AAACCCTTTG TATTAGTGCA TAAAAGCCCG CTAGGTAGGT TTTAAAAATT TTAATGGAAA CAACAGTTTC TGTGCATGTA TGAAGGCGAA GTATTCTAGC AAACTATGCT TGAACTTCCT GGACTGGGCA TGTAAGTCTC CTGAGCCTCG ATGCCAGCCA GTCTCTTGGA ACTCCGGGAA GGGTGATGGC CCCCCAGTTG GACCTGTTGA CTTGTGCGAC ACCTTGAAGA GCTGATTTTG TATCTAGGTT TCTTCTTATA TGCAGCTCCA GACTCTCTGC GCAGCAGCAG GAGTTGCCTG AAGGTATGAT GCATAACTAG TTTGCTCTTT CCTCTAGAGC TTGCTTAGTG GCAGGCAGTT TTATCCAGAT GGACAACTTG CGTCTGGTGT TGATTACTTC CAGGAGAGAT CCAACAACAG GAGTACCACT TCGCGACCAA TGTGGGGTGA CTTCACATTT TTTATCTCAG TGACTCTGGG ACATATATAG ATAGGGACAT GTGAGATTGT CTACCAAACA ACATTGTTTC AGGATCAAGG TTTATATAAG TAGATTTGAT TCATGTGGAT TGTTTCAGTG TTAACGAAGT CGACCAGATT TGAAGTGAGT ACTGGTGCAA TGGATAGCTG CAACTGCGAA ATTATGTCTT CTGAAAAGCT GTGATTCACA ACTACTTGGA AGAGGCCAGT GCCG |
CDS |
| >Mp2g03810.1 ATGGCCTCCC AAGGTCCCGA GCTCAGTCCT ACAGCGGCCA GCCTCGATGG CCAGCTTCAA GATTTGTTCC GCGCACTCTC GACTGGTTTT CAAAAATTGG ACAAGGTTAA AGATGCCAAC CGCCAAAGCA AGCAACTTGA GGAACTTACC GCGAAAATGC GGGAAGCGAA ACGACTCATT AAGGATTTCG ATCGAGAGAT CAAGGACGAA GAGTCACGAA ACTCGCCAGA AGTCAACAAG CAGTTGAATG AGAAGAAGCA AGCTCTGATC AAAGAACTCA ACTCCTATGT CGCTCTTCGC AAAACCTACA CGAGCGCCCT TGGTGGAGGT AGAAACGAGC TTCTTGATGG AGGCAAAGGA GAGCCTTTGA TTGATGACGG TGTGAAGTTG GCATCAACAA TGACGAATCA ACAACTCATG GATACCGGAA GAAAGCAGAT GGACGAAACA GACCAAACAA TCGAACGGTC TAAGAAGGTT GTCCAAGATA CCATCAATAT TGGTGAACAA ACTGCTTTGA CACTGAAGGC TCAGACAGAG CAAATGGGCA GAATTGTGAA TGAATTGGAC ACCATCCAGT TTTCAATCAA GAAGGCCTCT CAACTGGTGA AAGAAATCGG TAGGCAGCTA GCCACAGATA AATGCATTAT GTTCTTCCTC TTTTTGATTG TTTGTGGAGT AATTGCCATC ATCATTGTTA AGGTTGTTAA CCCAAAAAAC AAGAATATTG TCGATATCCC TGGGCTGGCA CCCCCGGCAA GTACTACTAC CAACAGACGG CTCTTGCTCG CTTTGTTGGA GTCCTAG |
Protein |
| >Mp2g03810.1 MASQGPELSP TAASLDGQLQ DLFRALSTGF QKLDKVKDAN RQSKQLEELT AKMREAKRLI KDFDREIKDE ESRNSPEVNK QLNEKKQALI KELNSYVALR KTYTSALGGG RNELLDGGKG EPLIDDGVKL ASTMTNQQLM DTGRKQMDET DQTIERSKKV VQDTINIGEQ TALTLKAQTE QMGRIVNELD TIQFSIKKAS QLVKEIGRQL ATDKCIMFFL FLIVCGVIAI IIVKVVNPKN KNIVDIPGLA PPASTTTNRR LLLALLES |