Mp2g08260



Description

Annotation

Database ID Description
ProSiteProfiles PS50863 B3 DNA-binding domain profile.
CDD cd10017 B3_DNA
Pfam PF02362 B3 DNA binding domain
PANTHER PTHR31140 B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3
SMART SM01019 B3_2
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 -
KEGG K09287 RAV-like factor
MapolyID Mapoly0474s0001 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpB3-8 transcription factor, B3 Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, B3 (from nomenclature)

0 core 1 peripheral

Flores-Sandoval, E., et al. (2018b) · Frontiers in Plant Science  research sequence comparator
B3-domain TF noted via Arabidopsis ortholog comparison (ABA response) and listed among enriched DEGs.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g08260.1 chr2:9270412..9279051 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g08260 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g08260 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.