Mp2g09050



Description

Annotation

Database ID Description
Pfam PF19273 Exportin-5 family
Gene3D G3DSA:1.25.10.10 -
SUPERFAMILY SSF48371 ARM repeat
Pfam PF08389 Exportin 1-like protein
PANTHER PTHR11223 EXPORTIN 1/5
KEGG K14289 exportin-5
KOG KOG2020 Nuclear transport receptor CRM1/MSN5 (importin beta superfamily); C-term missing; [YU]
MapolyID Mapoly0015s0189 -
GO GO:0005634 nucleus
GO GO:0006611 protein export from nucleus
GO GO:0003723 RNA binding
GO GO:0006405 RNA export from nucleus
GO GO:0042565 RNA nuclear export complex
GO GO:0005049 nuclear export signal receptor activity
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpHST1 Nuclear transport receptor protein exportin-5; Exportin 1-like protein; ARM repeat superfamily protein Published

Associated Literature (AI-based literature mining, Beta-version)

Nuclear transport receptor protein exportin-5; Exportin 1-like protein; ARM repeat superfamily protein; Contains ARM repeat and belongs to importin beta superfamily (from nomenclature)

0 core 1 peripheral

Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)

Transcript models

Transcript ID Location Sequences Extract region
Mp2g09050.1 chr2:9968951..9980341 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g09050 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g09050 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.