Mp2g09100



Description

Annotation

Database ID Description
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
Pfam PF01535 PPR repeat
Pfam PF13812 Pentatricopeptide repeat domain
Pfam PF13041 PPR repeat family
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
SUPERFAMILY SSF81901 HCP-like
FunFam G3DSA:1.25.40.10:FF:000558 Pentatricopeptide repeat-containing protein At5g39710
Pfam PF12854 PPR repeat
NCBIfam TIGR00756 pentatricopeptide repeat
PANTHER PTHR47933 PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL
KOG KOG4422 Uncharacterized conserved protein; C-term missing; [S]
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0015s0193 -
GO GO:0003729 mRNA binding
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_14 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp2g09100.1 chr2:10022643..10026759 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g09100 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g09100 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.