Mp2g11050
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF00957 | Synaptobrevin |
| ProSiteProfiles | PS50859 | Longin domain profile. |
| CDD | cd14824 | Longin |
| PANTHER | PTHR45837 | VESICLE-TRAFFICKING PROTEIN SEC22B |
| FunFam | G3DSA:1.20.5.110:FF:000028 | 25.3 kDa vesicle transport protein-like |
| FunFam | G3DSA:3.30.450.50:FF:000003 | 25.3 kDa vesicle transport protein-like |
| Pfam | PF13774 | Regulated-SNARE-like domain |
| Gene3D | G3DSA:1.20.5.110 | - |
| SUPERFAMILY | SSF64356 | SNARE-like |
| CDD | cd15866 | R-SNARE_SEC22 |
| Gene3D | G3DSA:3.30.450.50 | Longin domain |
| SMART | SM01270 | Longin_2 |
| ProSiteProfiles | PS50892 | v-SNARE coiled-coil homology domain profile. |
| SUPERFAMILY | SSF58038 | SNARE fusion complex |
| KEGG | K08517 | vesicle transport protein SEC22 |
| KOG | KOG0862 | Synaptobrevin/VAMP-like protein SEC22; [U] |
| MapolyID | Mapoly0023s0071 | - |
| GO | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment |
| GO | GO:0005789 | endoplasmic reticulum membrane |
| GO | GO:0031201 | SNARE complex |
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport |
| GO | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
| GO | GO:0000139 | Golgi membrane |
| GO | GO:0012507 | ER to Golgi transport vesicle membrane |
| GO | GO:0048280 | vesicle fusion with Golgi apparatus |
| GO | GO:0005484 | SNAP receptor activity |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSEC22 | Ortholog of Arabidopsis SEC22 genes | Published |
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis SEC22 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSEC22 driven by the cauliflower mosaic virus 35S promoter is localized to the endoplasmic reticulum. (from nomenclature)
0 core 4 peripheral
Bowman, J. L., et al. (2022)
· Plant Cell review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Minamino, N., et al. (2022)
· Development research experimental comparator
SEC22 SNARE; endomembrane marker.
Kanazawa, T., et al. (2016)
· Plant and Cell Physiology research sequence comparator
SEC22 SNARE; family inventory.
Kanazawa, T., et al. (2020)
· Nature Communications research experimental tool
ER SNARE marker; compartment control.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp2g11050 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp2g11050.1 CGTGGCCGAG AGTCTGTCGT GCGGGCTTCC TTCCCCTTGC CAAGAGCGAT TCGGCCCGCC CGTCCTTCCG TCGCGGTGGC CTCTGTCGTC GAGAGGAGGA CGAGGGATCG GGATAGTTGT AGCAGAGAGA GCATTTTGTC CTCGTGCTCG GGTGTCGGGC GTTGGCGGGG TGCTCTTGCG TCGACGACGA GGGATCCAAG GATCCAAGGA TCCAGGTGCC CGCGACCGCG ACCGCGATCG GAGAGAGGCC TACCGCACTG GATCGTTGGA GTGAGCCGCG AGTAGATGCA GGTTCCTTTT TTCGTCGGAC AGTTTGGGCG TGCCGGCCAG TCGCAGCAGC AGCAGCAGCA GCAGCAGCAG GAGGAGGAGG AGGAGGTGGA GGAGTACGAG GACGAGGAGC AGCAGCAGCA GCAGGAGTAG CAGCAGTCAG AGTCGAGCGT TCGGTGTCGG AGGTCTCTCC CGGAGCTCAG GTCTTTGGGA ATTAGGGTCC CTCGATTGAC AATTGTGGCC GATCCTTATC TTTGAACGAA ATCGTTGTGG AGTTCTGATC ATCATGACAC GGTAGGATCA TGGGCCGGAT GTGGGTTTTG CGCTGATGAT GTGTTAGGAC GGCGGTTCGT GTTGAGATTT GGTGATTCTA TCTCGTCTTT GATTTCTTGG GTCGTCGCGA TTGAGTACAG CGCCTGCGTG GTGGATACAG GTGATCACAT CAGGTGCACA GGTTTTGGGA GTGCGAGGCG ATTTCGTCAT TTAGAGCTGT TGCCCAAATT ATTCCCCCGA TACTGAACCC CGGGCTGGAA CAGCGAATTT CCTTCGCAAC GATCTCATCA ACCGTGAAGG GAAATTAAAA TAGACCGATC AGCGGCCAGG TAGCAAGTCG TTGCCCAACA GAAGGCGGGC TTCTTAGAGA ATTCAGAAGA GTACCAGATG GTTAAATTAA CCATTATTGC GCGGGTCACA GACGGTCTAC CTTTGGCAGA AGGTCTTGAT GATGGACGGG ATCAGCAAAA AGATTTGGAG TTTTACAAGC TGCAAGCTAA ATCGCTCTTT AAGAAGCTTT CTCAAGGTCA ACACGAGCCG TCTCGCATGT CAGTAGAGAC CGGGTCCTAC TTCTTCCAGT ATCCTTTGCA ACTTCCACCT GACAGAACTT TCTGTGCTCG CTGGAATTCG GTTAACAAAC GTAGCGTCAA TCTAATTCTC ATGAAATCTG AGGCTGGGTG GCCACTGCTT TAACTTGGGA TGTGAGAAAA TACCATTCCA AATCAGATTC TTCTCTCTGT TGTTCTTTTT CTCCAGTCCA ATCGTGTCCG CCTTGTTTGA GTTAGTCATG TTTGTTCTTC GTGTAGAGAT TGTATTCGTG CATGCAGATC AGAACTCGCG TGAATTCTAT TGCGAAAATT TCAATGTATT TTCTTGACAA GACTACTACA GTTACATTAT CGAGGGTGGT GTCTGCTACC TGACTCTATG TGAACGCTCT TACCCCAAGA AACTTGCTTA TCAGTACCTG GAAGAACTGC AACGAGAGTT TGAAAAGGTT AACAGGAGTC AAATCGAAAC TGTGGCGAGA CCCTATGCCT TCATCAAATT TGGTATGATG ACCTAGGTCA TTTCACGTCT TCATGCGTTT GTGTTAATTG TTGTCCAGCT TGTAGCTGAG TCGAATGGCA CCCAGTCAAT CATCCTACAC AAGTTAGCTA GGAATGGAAC AGCTCTTTTT TTTGGCCAGT GGATGACGTT TTATTTGCAC GAAGTGTTGA AGTTCCAGAA CATGCTCCTG GAATGCAGAT ACTCAAACGC AAAGTCATGC ATTTATGGGT TGTGTGGGCT GAAAGTCCTT AATGCTCTTG ACTGTGGGGA AACAAAGTGC TGAATAGCAG CTGCTTCTCT CAACAGTTTT GAGCTTTGAG AATAGTCATC TGCTAAAATG AGTACTCTCA AATGAGTATT CCTTCGAATT CGAGACTCTT CACAATTCTA TTTTCTCCCT AAAAAAATGC GTGAATTTGA AGCACGTGGT GAAAGCACTT AAAGGTTCAT TCACCACTGG AGCCATCTTA TGAGCTACCC TCAACGAGCC CCGATTTGGT CTCCAAGTCT GAATTGTTAC CACACGTAAA ACTGAAACAT GTGAAAAGTT TTATGCTCAT TTCTGACATT GGTCTTCGCA GATACCTTCA TTCAGAAAAC GAGGAAGCTC TACCTGGATA CTCGGACTCA ACGTAACTTG TCAAAGTTAA ACGATGATCT ATACGAGGTT CAGCAGATCA TGACCCGCAA CATTCAAGAA GTGCTAGGTG TCGGGGACAG ACTGGACCGT AAGCAATCTA TGAACCTCTA TCAGAACTTT TAGTCACAGG TTGCCGGTGT AGTTGTTGAC CTTTGCTTGA AGCTGGAGCG TTCCTTGCTG CACAGCATCG TAATGGCCAC TGCTTAAACT AAACACGGCA CAGACACAAA GTTTTCATCT TTTTGTAAGT GCTTATGTGT GCGTCTCAAC GTTGCAGAGG TCAGCCAAAT GTCGAATCGT CTTACTTCAG AATCCCGCCA TATGGTTATG ATGGCTAAGG ATCTCAATCG GCAGGTAAGA AGACGAAAAA GTTTTTACAT TTGTCTGCTT GCAATATCCA GTGGACAGTT TAAGAAGAAG CCTCGAACTT CATGTTCTTG TTTTGAAATG TCATTTTTTC TGTTCTATTC TCCATCGATC AACCAAAAAC TAGTCCAAAT CACATGCTTT GCTTTTGTCA TGTGTTGGCA GGCATTGATC AAGAAGTGGG CACCGGTGGT AATTGTTGTA GGAGTTGTAT GTACTATGTT GTTGCTGAGG CGATACATTT TCGGCTGATT TTCTTTTATA TATTGGTTAC CATTATTTCA GAGTTACATC CATTTGTCAA TAGTGTGCTT TATTCCCACG CGTCAAAGTT GGGCTAAAGC AGCTCTCGAT TTTGTACTGT CAAACCGAGG GACTTCTCTC TATGCTCTCA TTGCCGTTGG TAAACAGGGC GGTTGGGTTC GAGTATCCAA GGACCATGGT CATGTGGTTT TATCATCCAA GGAAATTGTG CTCGTCTCTT CGGGTTTGCA ATATAGTTGT CAAACGATTT CCTTTCTGCG ATTTTGCAAC CTCTTGTATA CGGGTAACAT AGCGGTAGGT ATCAACACAT GTCGTCCTTT GTGTTGTACG TTCTCATTAG ACTCAAGTCC TCACTAAGTT TGCATGGGAG TCTCAGTCTC AATCTCAATC TCAATCTTGG CAAAATATTT GCATGCTCTT GACAGTCGTT CATAACGAAG TGAAACATGT TGTGGACATA TTTGAAGAGA GGTAGTTCAG GGCAGTTGAG GCAGCACACA CGTTGGATAA GCTTTCATTG TTTCAATGG |
mRNA UTR + CDS |
| >Mp2g11050.1 CGTGGCCGAG AGTCTGTCGT GCGGGCTTCC TTCCCCTTGC CAAGAGCGAT TCGGCCCGCC CGTCCTTCCG TCGCGGTGGC CTCTGTCGTC GAGAGGAGGA CGAGGGATCG GGATAGTTGT AGCAGAGAGA GCATTTTGTC CTCGTGCTCG GGTGTCGGGC GTTGGCGGGG TGCTCTTGCG TCGACGACGA GGGATCCAAG GATCCAAGGA TCCAGGTGCC CGCGACCGCG ACCGCGATCG GAGAGAGGCC TACCGCACTG GATCGTTGGA GTGAGCCGCG AGTAGATGCA GGTTCCTTTT TTCGTCGGAC AGTTTGGGCG TGCCGGCCAG TCGCAGCAGC AGCAGCAGCA GCAGCAGCAG GAGGAGGAGG AGGAGGTGGA GGAGTACGAG GACGAGGAGC AGCAGCAGCA GCAGGAGTAG CAGCAGTCAG AGTCGAGCGT TCGGTGTCGG AGGTCTCTCC CGGAGCTCAG GTCTTTGGGA ATTAGGGTCC CTCGATTGAC AATTGTGGCC GATCCTTATC TTTGAACGAA ATCGTTGTGG AGTTCTGATC ATCATGACAC GGTGATCACA TCAGGTGCAC AGGTTTTGGG AGTGCGAGGC GATTTCGTCA TTTAGAGCTG TTGCCCAAAT TATTCCCCCG ATACTGAACC CCGGGCTGGA ACAGCGAATT TCCTTCGCAA CGATCTCATC AACCGTGAAG GGAAATTAAA ATAGACCGAT CAGCGGCCAG GTAGCAAGTC GTTGCCCAAC AGAAGGCGGG CTTCTTAGAG AATTCAGAAG AGTACCAGAT GGTTAAATTA ACCATTATTG CGCGGGTCAC AGACGGTCTA CCTTTGGCAG AAGGTCTTGA TGATGGACGG GATCAGCAAA AAGATTTGGA GTTTTACAAG CTGCAAGCTA AATCGCTCTT TAAGAAGCTT TCTCAAGGTC AACACGAGCC GTCTCGCATG TCAGTAGAGA CCGGGTCCTA CTTCTTCCAT TACATTATCG AGGGTGGTGT CTGCTACCTG ACTCTATGTG AACGCTCTTA CCCCAAGAAA CTTGCTTATC AGTACCTGGA AGAACTGCAA CGAGAGTTTG AAAAGGTTAA CAGGAGTCAA ATCGAAACTG TGGCGAGACC CTATGCCTTC ATCAAATTTG ATACCTTCAT TCAGAAAACG AGGAAGCTCT ACCTGGATAC TCGGACTCAA CGTAACTTGT CAAAGTTAAA CGATGATCTA TACGAGGTTC AGCAGATCAT GACCCGCAAC ATTCAAGAAG TGCTAGGTGT CGGGGACAGA CTGGACCAGG TCAGCCAAAT GTCGAATCGT CTTACTTCAG AATCCCGCCA TATGGTTATG ATGGCTAAGG ATCTCAATCG GCAGGCATTG ATCAAGAAGT GGGCACCGGT GGTAATTGTT GTAGGAGTTG TATGTACTAT GTTGTTGCTG AGGCGATACA TTTTCGGCTG ATTTTCTTTT ATATATTGGT TACCATTATT TCAGAGTTAC ATCCATTTGT CAATAGTGTG CTTTATTCCC ACGCGTCAAA GTTGGGCTAA AGCAGCTCTC GATTTTGTAC TGTCAAACCG AGGGACTTCT CTCTATGCTC TCATTGCCGT TGGTAAACAG GGCGGTTGGG TTCGAGTATC CAAGGACCAT GGTCATGTGG TTTTATCATC CAAGGAAATT GTGCTCGTCT CTTCGGGTTT GCAATATAGT TGTCAAACGA TTTCCTTTCT GCGATTTTGC AACCTCTTGT ATACGGGTAA CATAGCGGTA GGTATCAACA CATGTCGTCC TTTGTGTTGT ACGTTCTCAT TAGACTCAAG TCCTCACTAA GTTTGCATGG GAGTCTCAGT CTCAATCTCA ATCTCAATCT TGGCAAAATA TTTGCATGCT CTTGACAGTC GTTCATAACG AAGTGAAACA TGTTGTGGAC ATATTTGAAG AGAGGTAGTT CAGGGCAGTT GAGGCAGCAC ACACGTTGGA TAAGCTTTCA TTGTTTCAAT GG |
CDS |
| >Mp2g11050.1 ATGGTTAAAT TAACCATTAT TGCGCGGGTC ACAGACGGTC TACCTTTGGC AGAAGGTCTT GATGATGGAC GGGATCAGCA AAAAGATTTG GAGTTTTACA AGCTGCAAGC TAAATCGCTC TTTAAGAAGC TTTCTCAAGG TCAACACGAG CCGTCTCGCA TGTCAGTAGA GACCGGGTCC TACTTCTTCC ATTACATTAT CGAGGGTGGT GTCTGCTACC TGACTCTATG TGAACGCTCT TACCCCAAGA AACTTGCTTA TCAGTACCTG GAAGAACTGC AACGAGAGTT TGAAAAGGTT AACAGGAGTC AAATCGAAAC TGTGGCGAGA CCCTATGCCT TCATCAAATT TGATACCTTC ATTCAGAAAA CGAGGAAGCT CTACCTGGAT ACTCGGACTC AACGTAACTT GTCAAAGTTA AACGATGATC TATACGAGGT TCAGCAGATC ATGACCCGCA ACATTCAAGA AGTGCTAGGT GTCGGGGACA GACTGGACCA GGTCAGCCAA ATGTCGAATC GTCTTACTTC AGAATCCCGC CATATGGTTA TGATGGCTAA GGATCTCAAT CGGCAGGCAT TGATCAAGAA GTGGGCACCG GTGGTAATTG TTGTAGGAGT TGTATGTACT ATGTTGTTGC TGAGGCGATA CATTTTCGGC TGA |
Protein |
| >Mp2g11050.1 MVKLTIIARV TDGLPLAEGL DDGRDQQKDL EFYKLQAKSL FKKLSQGQHE PSRMSVETGS YFFHYIIEGG VCYLTLCERS YPKKLAYQYL EELQREFEKV NRSQIETVAR PYAFIKFDTF IQKTRKLYLD TRTQRNLSKL NDDLYEVQQI MTRNIQEVLG VGDRLDQVSQ MSNRLTSESR HMVMMAKDLN RQALIKKWAP VVIVVGVVCT MLLLRRYIFG |