Mp2g12180



Description

Annotation

Database ID Description
SUPERFAMILY SSF48484 Lipoxigenase
Gene3D G3DSA:3.10.450.60 -
Gene3D G3DSA:2.60.60.20 PLAT/LH2 domain
ProSiteProfiles PS51393 Lipoxygenase iron-binding catalytic domain profile.
PANTHER PTHR11771 LIPOXYGENASE
SUPERFAMILY SSF49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
PRINTS PR00087 Lipoxygenase signature
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR00468 Plant lipoxygenase signature
Pfam PF00305 Lipoxygenase
Gene3D G3DSA:1.20.245.10 -
MapolyID Mapoly0023s0182 -
GO GO:0046872 metal ion binding
GO GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO GO:0005515 protein binding
GO GO:0034440 lipid oxidation
GO GO:0016491 oxidoreductase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpLOX6 Lipoxygenase Published

Associated Literature (AI-based literature mining, Beta-version)

Lipoxygenase; Mapoly0023s0182.1 (from nomenclature)

0 core 1 peripheral

Jibran, R., et al. (2024b) · Frontiers in Plant Science  research experimental background
LOX2 lipoxygenase; up DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g12180.1 chr2:13132233..13137217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g12180 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g12180 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.