Mp2g12220



Description

Annotation

Database ID Description
PANTHER PTHR11771 LIPOXYGENASE
Gene3D G3DSA:1.20.245.10 -
Gene3D G3DSA:2.60.60.20 PLAT/LH2 domain
SUPERFAMILY SSF49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
PRINTS PR00087 Lipoxygenase signature
SUPERFAMILY SSF48484 Lipoxigenase
Coils Coil Coil
Pfam PF00305 Lipoxygenase
PRINTS PR00468 Plant lipoxygenase signature
ProSiteProfiles PS51393 Lipoxygenase iron-binding catalytic domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.10.450.60 -
KOG KOG1995 Conserved Zn-finger protein; N-term missing; [R]
MapolyID Mapoly0026s0148 -
GO GO:0046872 metal ion binding
GO GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO GO:0005515 protein binding
GO GO:0034440 lipid oxidation
GO GO:0016491 oxidoreductase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpLOX8 Lipoxygenase Published

Associated Literature (AI-based literature mining, Beta-version)

Lipoxygenase; Mapoly0026s0148.1 (from nomenclature)

0 core 1 peripheral

Soriano, G., et al. (2022) · New Phytologist  research experimental background
Lipoxygenase (Mp2g12220); jasmonate/wound-responsive DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g12220.1 chr2:13237058..13242433 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g12220 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g12220 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.