Mp2g13020



Description

Annotation

Database ID Description
Gene3D G3DSA:1.10.10.60 -
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
PANTHER PTHR44042 DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
SUPERFAMILY SSF46689 Homeodomain-like
CDD cd00167 SANT
ProSiteProfiles PS51293 SANT domain profile.
FunFam G3DSA:1.10.10.60:FF:000154 Transcription factor SRM1
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50090 Myb-like domain profile.
FunFam G3DSA:1.10.10.60:FF:000009 transcription factor MYB1R1
SMART SM00717 sant
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
Pfam PF00249 Myb-like DNA-binding domain
KOG KOG0724 Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains; C-term missing; [O]
KOG KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230; N-term missing; [K]
MapolyID Mapoly0026s0070 -
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpRR-MYB2 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

RR-type MYB-related TF; controls chloroplast biogenesis; Mprr-myb2 perturbs petE expression.

1 core 2 peripheral

Frangedakis, E., et al. (2024) · Cell  research experimental subject
RR-type MYB-related TF; controls chloroplast biogenesis; Mprr-myb2 perturbs petE expression.
Kushwaha A, Singh S, Zheng BS, Tripathi DK, Gupta R, Singh VP. (2025) · Journal of integrative plant biology  other citation background
Subject of this commentary, which highlights MpRR-MYB2/5 as newly identified regulators of chloroplast biogenesis (cited from the primary study; no original data here).
Frangedakis E, Yelina NE, Eeda SK, Romani F, Fragkidis A, Haseloff J, Hibberd JM. (2026) · Journal of experimental botany  research experimental tool
Targeted (with MpRR-MYB5) to validate multiplexed CRISPR editing efficiency; used as a test target, not functionally studied.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g13020.1 chr2:13989659..13993809 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g13020.2 chr2:13989155..13993809 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g13020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g13020 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.