Mp2g16500



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR37723 PROTEIN FAR-RED ELONGATED HYPOCOTYL 1
MapolyID Mapoly0122s0014 -
GO GO:0051457 maintenance of protein location in nucleus
GO GO:0009416 response to light stimulus
GO GO:0016607 nuclear speck
GO GO:0061608 nuclear import signal receptor activity
GO GO:0005737 cytoplasm
GO GO:0009639 response to red or far red light

Nomenclature

Gene symbol Product Transcript ID Status
MpFHY1 A phytochrome signaling protein Published

Associated Literature (AI-based literature mining, Beta-version)

FAR-RED ELONGATED HYPOCOTYL1 ortholog; critical (with phytochrome) for FR-HIR signaling (CRISPR).

1 core 0 peripheral

Inoue, K., et al. (2019a) · Plant and Cell Physiology  research experimental subject
FAR-RED ELONGATED HYPOCOTYL1 ortholog; critical (with phytochrome) for FR-HIR signaling (CRISPR).

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16500.1 chr2:18709953..18715561 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g16500.2 chr2:18711211..18715424 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16500 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16500 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.