Mp2g16560



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00072 Response regulator receiver domain
PANTHER PTHR43874 TWO-COMPONENT RESPONSE REGULATOR
Gene3D G3DSA:3.40.50.2300 -
SMART SM00448 REC_2
ProSiteProfiles PS50110 Response regulatory domain profile.
Pfam PF06203 CCT motif
ProSiteProfiles PS51017 CCT domain profile.
SUPERFAMILY SSF52172 CheY-like
KEGG K12129 pseudo-response regulator 7
KOG KOG0519 Sensory transduction histidine kinase; N-term missing; [T]
KOG KOG3080 Nucleolar protein-like/EBNA1-binding protein; N-term missing; [A]
MapolyID Mapoly0122s0007 -
GO GO:0005515 protein binding
GO GO:0009736 cytokinin-activated signaling pathway
GO GO:0000160 phosphorelay signal transduction system

Nomenclature

Gene symbol Product Transcript ID Status
MpPRR PRR3/7 Published

Associated Literature (AI-based literature mining, Beta-version)

PRR-family gene clustering with the AtPRR3/7 clade; shows the strongest circadian transcriptional oscillation under day/night and constant light. Negatively regulated by MpTOC1 and positively by MpRVE; knockout disrupts bioluminescence patterning. Strongly expressed in meristematic and apical regions.

3 core 2 peripheral

Kanesaka, Y., et al. (2023) · Frontiers in Plant Science  research experimental subject
CRISPR/Cas9 knockout mutant generated; its promoter also drove a luciferase reporter for monitoring clock rhythms. Mutation caused no significant change in gametangiophore formation timing under tested daylengths.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research experimental subject
Knockout mutant (Mpprrko) loses rhythmic thallus movement in continuous light and shows arrhythmic clock gene expression. Forms part of a core transcriptional feedback loop; repressed by MpTOC1 and activated by MpRVE.
Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
PRR-family gene clustering with the AtPRR3/7 clade; shows the strongest circadian transcriptional oscillation under day/night and constant light. Negatively regulated by MpTOC1 and positively by MpRVE; knockout disrupts bioluminescence patterning. Strongly expressed in meristematic and apical regions.
Lagercrantz, U., et al. (2021) · New Phytologist  research experimental comparator
Pseudo-response regulator; core clock gene.
Mecchia, M. A., et al. (2021) · Current Biology  research experimental background
Pseudo-response regulator referenced; MpPRR promoter used.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16560.1 chr2:18781661..18787922 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g16560.2 chr2:18781770..18787922 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16560 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16560 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.