Mp2g16780



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.1440:FF:000005 Tubulin beta chain
Pfam PF03953 Tubulin C-terminal domain
FunFam G3DSA:3.30.1330.20:FF:000002 Tubulin beta chain
Pfam PF00091 Tubulin/FtsZ family, GTPase domain
Gene3D G3DSA:3.30.1330.20 -
PRINTS PR01161 Tubulin signature
SUPERFAMILY SSF52490 Tubulin nucleotide-binding domain-like
SUPERFAMILY SSF55307 Tubulin C-terminal domain-like
ProSitePatterns PS00227 Tubulin subunits alpha, beta, and gamma signature.
PANTHER PTHR11588 TUBULIN
Gene3D G3DSA:1.10.287.600 Helix hairpin bin
PRINTS PR01163 Beta-tubulin signature
Gene3D G3DSA:3.40.50.1440 Tubulin/FtsZ, GTPase domain
ProSitePatterns PS00228 Tubulin-beta mRNA autoregulation signal.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00864 Tubulin_4
CDD cd02187 beta_tubulin
SMART SM00865 Tubulin_C_4
Coils Coil Coil
FunFam G3DSA:1.10.287.600:FF:000002 Tubulin beta chain
KEGG K07375 tubulin beta
KOG KOG1375 Beta tubulin; [Z]
MapolyID Mapoly0109s0019 -
GO GO:0003924 GTPase activity
GO GO:0005200 structural constituent of cytoskeleton
GO GO:0007017 microtubule-based process
GO GO:0005525 GTP binding
GO GO:0000278 mitotic cell cycle
GO GO:0005874 microtubule
GO GO:0005737 cytoplasm
GO GO:0000226 microtubule cytoskeleton organization

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

0 core 1 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16780.1 chr2:19271609..19274536 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g16780 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g16780 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.