Mp2g17840



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR10353 GLYCOSYL HYDROLASE
Pfam PF00232 Glycosyl hydrolase family 1
PRINTS PR00131 Glycosyl hydrolase family 1 signature
SUPERFAMILY SSF51445 (Trans)glycosidases
Gene3D G3DSA:3.20.20.80 Glycosidases
KEGG K21362 galactolipid galactosyltransferase [EC:2.4.1.184]
KOG KOG0626 Beta-glucosidase, lactase phlorizinhydrolase, and related proteins; [G]
MapolyID Mapoly0094s0053 -
GO GO:0005975 carbohydrate metabolic process
GO GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO GO:0008422 beta-glucosidase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpGH1.3 Cell wall related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Clade I SFR2-homolog functionally characterized by GFP localization, TGDG assay, and CRISPR knockout. MpGGGT1-GFP localized to chloroplast envelope and produced TGDG even without acid treatment; Mpgggt1 mutants failed to accumulate TGDG and TAG, showed chlorosis and impaired recovery after acetic acid stress. Identified as the major GGGT required for acid-induced TGDG accumulation and stress recovery.

1 core 0 peripheral

Shimizu, S., et al. (2024) · Journal of Plant Research  research experimental subject
Clade I SFR2-homolog functionally characterized by GFP localization, TGDG assay, and CRISPR knockout. MpGGGT1-GFP localized to chloroplast envelope and produced TGDG even without acid treatment; Mpgggt1 mutants failed to accumulate TGDG and TAG, showed chlorosis and impaired recovery after acetic acid stress. Identified as the major GGGT required for acid-induced TGDG accumulation and stress recovery.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g17840.1 chr2:20711131..20718296 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g17840 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g17840 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.