Mp2g20730



Description

Annotation

Database ID Description
Pfam PF08264 Anticodon-binding domain of tRNA ligase
Coils Coil Coil
CDD cd00817 ValRS_core
Pfam PF10458 Valyl tRNA synthetase tRNA binding arm
Gene3D G3DSA:3.90.740.10 -
CDD cd07962 Anticodon_Ia_Val
SUPERFAMILY SSF52374 Nucleotidylyl transferase
Gene3D G3DSA:3.40.50.620 HUPs
Gene3D G3DSA:1.10.730.10 -
Hamap MF_02004 Valine--tRNA ligase [valS].
PRINTS PR00986 Valyl-tRNA synthetase signature
Pfam PF00133 tRNA synthetases class I (I, L, M and V)
SUPERFAMILY SSF46589 tRNA-binding arm
ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
FunFam G3DSA:1.10.287.380:FF:000001 Valine--tRNA ligase
PANTHER PTHR11946 VALYL-TRNA SYNTHETASES
SUPERFAMILY SSF47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
SUPERFAMILY SSF50677 ValRS/IleRS/LeuRS editing domain
FunFam G3DSA:3.40.50.620:FF:000020 Valine--tRNA ligase, mitochondrial
Gene3D G3DSA:1.10.287.380 -
FunFam G3DSA:3.40.50.620:FF:000126 Valine--tRNA ligase chloroplastic/mitochondrial 2
FunFam G3DSA:1.10.730.10:FF:000014 Valine--tRNA ligase
NCBIfam TIGR00422 valine--tRNA ligase
KEGG K01873 valyl-tRNA synthetase [EC:6.1.1.9]
KOG KOG0432 Valyl-tRNA synthetase; [J]
MapolyID Mapoly0040s0139 -
GO GO:0005524 ATP binding
GO GO:0002161 aminoacyl-tRNA editing activity
GO GO:0004832 valine-tRNA ligase activity
GO GO:0000166 nucleotide binding
GO GO:0006438 valyl-tRNA aminoacylation
GO GO:0004812 aminoacyl-tRNA ligase activity
GO GO:0006418 tRNA aminoacylation for protein translation
GO GO:0005737 cytoplasm
GO GO:0005829 cytosol

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

tRNA synthetase gene at a GWAS-associated locus for fungal symptom severity.

0 core 1 peripheral

El Mahboubi K, Beaulieu C, Castel B, Libourel C, Jariais N, Amblard E, van Beveren F, Keller J, Martinez Y, Nelson JM, Bonhomme M, Jacquet C, Delaux PM. (2026) · Proceedings of the National Academy of Sciences of the United States of America  research experimental background
tRNA synthetase gene at a GWAS-associated locus for fungal symptom severity.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g20730.1 chr2:25330641..25340295 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g20730 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g20730 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.