Mp2g21100



Description

Annotation

Database ID Description
ProSitePatterns PS01044 Squalene and phytoene synthases signature 1.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00494 Squalene/phytoene synthase
ProSitePatterns PS01045 Squalene and phytoene synthases signature 2.
SFLD SFLDS00005 Isoprenoid Synthase Type I
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase
FunFam G3DSA:1.10.600.10:FF:000004 Phytoene synthase chloroplastic
SFLD SFLDG01212 Phytoene synthase like
PANTHER PTHR31480 BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE
SUPERFAMILY SSF48576 Terpenoid synthases
CDD cd00683 Trans_IPPS_HH
KEGG K02291 15-cis-phytoene synthase [EC:2.5.1.32]
KOG KOG1459 Squalene synthetase; [I]
MapolyID Mapoly0040s0104 -
GO GO:0009058 biosynthetic process
GO GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity
GO GO:0004311 farnesyltranstransferase activity
GO GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO GO:0016117 carotenoid biosynthetic process

Nomenclature

Gene symbol Product Transcript ID Status
MpSQS1 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Associated Literature (AI-based literature mining, Beta-version)

Secondary metabolism enzyme, Terpene biosynthesis enzymes (from nomenclature)

0 core 1 peripheral

Forestier ECF, Asprilla P, Bonter I, Romani F, Frangedakis E, Haseloff J. (2026) · Communications biology  research sequence background
Squalene synthase isoform listed among annotated genes; not experimentally characterized here.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g21100.1 chr2:25848655..25852925 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g21100 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g21100 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.