Mp3g01640
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:2.30.31.10 | Transcriptional Coactivator Pc4; Chain A |
| SUPERFAMILY | SSF54447 | ssDNA-binding transcriptional regulator domain |
| PANTHER | PTHR31745 | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL |
| Pfam | PF08536 | Whirly transcription factor |
| MapolyID | Mapoly0007s0156 | - |
| GO | GO:0006355 | regulation of DNA-templated transcription |
| GO | GO:0006952 | defense response |
| GO | GO:0003697 | single-stranded DNA binding |
| GO | GO:0003677 | DNA binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpWHIRLY | transcription factor, Whirly | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
YFP fusion (EFp::MpWhirly-YFP) was expressed and imaged in isolated chloroplasts with DAPI-stained cp DNA. MpWhirly co-localized with chloroplast nucleoids, with signal also in the extra-nucleoid region. Studied as a candidate eukaryotic-derived cp nucleoid component in M. polymorpha.
1 core 0 peripheral
Kobayashi, Y., et al. (2016)
· Genome Biology and Evolution research experimental subject
YFP fusion (EFp::MpWhirly-YFP) was expressed and imaged in isolated chloroplasts with DAPI-stained cp DNA. MpWhirly co-localized with chloroplast nucleoids, with signal also in the extra-nucleoid region. Studied as a candidate eukaryotic-derived cp nucleoid component in M. polymorpha.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g01640 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g01640.1 GAGGTTACAA CGCCTCACTG AAGAGAACCT GGCCCGTTCA ACAGGTCGCT GAAGTGGGCG GCCCAAAATA GAGAGAGCGC CTAGCGAGCG GAGCGCAGCG TGGGTTGGGG GTTTATGGAG ATTCGAAAGA AGGAAGGACG GATTGCGCGC CTTCACCGGC CGCTTGTCTT GCGCATCCTC CGATCAAGCG ACTGCGAGAG TGGGCCAATC TAGAGGGCTC GAATCGTTGT TGAACTTGCT CTCTGCGCTC GACGATGGCT CTGCATTCGC TCTGCAACAG CTTGTCCCTC CGCATCGCTT CTTCTTCACG GTGTGCAGCT TCTCGTCCCT TCTGCTTCTC CCTTTTGATG TCGAGTTTTT TTATGATTGT GTCCAAGCGT TCAGTTTTCA AACCATGCTG ACCTGCTTCG TCAGTTTAGT GATGAAGTGT TTCACCGCAT ATGAATATTG CAAGACAGTT TTTAGTCGAG TCTCTTGGCC AATTGTGAGG TTTTTACTGA TCCTTAGAAT TTTTTTTTGG TTCAACCGCA TATATTTTCC TGCCGCTCAG ATCCTGTCAG AGTGGTTGGA ATTGTAGCTA CCGATGGATT TTACTTCGTA ATATCTGTAT TTGAGATCTA TATTAAGTGA TTCTAGAGGG GCTAGGTCGA TGCAAAATGC GAAATCTGTT TTTGTTACTG CTAGGGGAGA ATTCATAACC CTCCAATTTA ATTTCTTCTA TGTTGGCTTT CATCAGAAAG TGGATAGGTG ATGCGAAATC ATTGCGCAAG TCTTCTCAGT CTGTAGCTAT TAAACCATCG CGCCTTCAAG CAAGAGCTGA ATATGCCGGC TATACATCGC CCCAGAGCAC GACCACGCTT CGCACTAATG GTCAGCTCCC ATCTTCAGTT TAGTTTGGTA AAGCAACTTC AATTTTTGAT TGAGTTCTTT CTCTTTGTGC TTGAGCCGTG GGTACTCCAA AGCCAGCTGT TGTACGCACA TCTCCGCCAT AAGCGTGAGC ACGCTGCTCC ATTTCAGCTG TTGTCCACTA CTTTAACGCG TTTAATATTG AATAGTCGGG GTTGGATCAT TTGCAAACTC ATGTCGGTTG TTAGGGAATT CATTGACTGA TGGTCAGATA AAGCTGGGGA TGATTGTATC CATATGGTTT TATCTGTAAT GTGAAGGCAC TCAAGGTGCT CGCAGAGTTT TTGTGAACTA CACATTTTAC AAGACCAGAG GAGCGATGAG TATGAAACCC GTCAAACCTG TCTTCAAACT CCTGGATGTG AGTTCTTATT ATTTGTATTA GAGTCTCGTT TTTGTCTGTA CTTCACTACG TGCCTTGATA GTCTAAAGAT TTAAATAAGA GTAGGATGAT GGTTCAGTTG AAAGCCTTGA TGTACACATG TCAATTGTTT TTTCTCTTTG CAAATGTAGA CAGGTAACGC AGTTCTAGAT AGAGAGGGAA GCCTTTTTTT GGAGTTTGCA CCTCCCGTTG CCCAACGTCA GTACGATTGG AATTCGAAGC AGGTAAAACT CAAGACTTCT CGTCTTTATC AACCTGGTTG TGTGATATGG TGATAAAAGT CCAACGTATG TATCATGTTT GTCTAACTTA ACTGTTTCTA GTTTACCCTT TTCACGTCTT CCTAATTGAA CCTTGTTGTA CTGTATCCTC CAGATCTTTG CTTTATCTGT CATGGAATTA GGAACCCTTG TGGGGTTGGC TCCCGGTGAA AGTTGTGAAT TTTATCATGA CCCAAACATG GGCAAGAGGT GAGATTGGAC GACTTTGTCA CAGCTGTACT GTGACATGCT ATATGGGCTT CCGTTTCAAC ATATGACGTT GGCAGGAATT ATGCCACTCG TGAAACTAGG AGAAATTGTG CTTCTGTTTT CGATTGCTTC AAAAGTCATT GTTTTTGAGT TTTATTTATG TGTTAGTTCC TAGATATGGT GATGTCTCAT GAGTGTTTTC AGTGGAGCTC GGACATTTTT AGTTGATAAT TTGGCGAATG ATTCAGCGAT GCTGGCAAGA TAAGGAAATC ACTGAAAGTC AACCCAATGA AAGACGAAGA TGGTTATTAC TTCAATCTCA GTAAGCATCT CTACATGTCG TCATCGAAGT AGGGTTCCTT TGATGTTGAT TAGGAAAACG CGAACCTTGT TCACCCGTGA TAGCTTACCA TCGAGATCCA TCTAGTTGAG TAGATTCTTA TTCCTTTGGG TTAATCATAG ACGTGATTTC TCCAATGTTC ATTGTCATTC TTTTGAGACA GTGCGATACA ATGAGTTATT TTCTTAGTTT TTCTGTTAAC TGATTTTCTC ATCTTTTCTT TATTGGTTGT CTAGATCGTC AGTCTCATAG CAGATTCATG GCTAATCTAC TAGAGTCCAC TTTCGAGTTA AACAAGACTG TCCGACTGCA TGTTGTCACG AGCATATTGT CGTGTGTTCA GGTGTGGTGA ACAAGCAAGA AAACTTAGAC GAAAGAGTGA ATATTGCCCT TACGAGAGCT GAGTACTCCG TGATGAGATC TTCAATAAAT GTACTTTCAT ATTCTTCTCC GCTCTTCCTC TCGTCTCCAT CTTGATTTGT CCTTGATGAG TCTAGGACTA GAAACTTGAC ATTTTATCCA AAATATACTG ATCATGCATC ACGGATGTGA ATGTCTTGCA GTACATTATC CCATATTTGA TGGGTTGGCA CGTGTTTGTT GACCCCTCGA CGGTGGATGA CTTCTTGGCC GATGATGAGC CAGTCGGCTC GATGACAACA AAAAATGAAT GGGATAAGTA GGGAGAAGAC GGAGTATTTT TCCTAACAGA GCAGGCGAAG AAGAAATGAG CGAAACCTTG TGCATTGGTG GTCACTCTTA GTACAGAACA ATAGAAGGAC TTGAAAATTT TGTAGATCCT CTACTCATCT CCTCGTTTAC TATCCTGCAT AGAAGTCAGA ACAGTCCTTG TAAGTTAATG CTACATCCCA GTGATGTAAT CGAAATGTAA ATTTTGTTGA CAAGAGAAGG AAACACACAT GTATTTTCTG ATGGAC |
mRNA UTR + CDS |
| >Mp3g01640.1 GAGGTTACAA CGCCTCACTG AAGAGAACCT GGCCCGTTCA ACAGGTCGCT GAAGTGGGCG GCCCAAAATA GAGAGAGCGC CTAGCGAGCG GAGCGCAGCG TGGGTTGGGG GTTTATGGAG ATTCGAAAGA AGGAAGGACG GATTGCGCGC CTTCACCGGC CGCTTGTCTT GCGCATCCTC CGATCAAGCG ACTGCGAGAG TGGGCCAATC TAGAGGGCTC GAATCGTTGT TGAACTTGCT CTCTGCGCTC GACGATGGCT CTGCATTCGC TCTGCAACAG CTTGTCCCTC CGCATCGCTT CTTCTTCACG AAAGTGGATA GGTGATGCGA AATCATTGCG CAAGTCTTCT CAGTCTGTAG CTATTAAACC ATCGCGCCTT CAAGCAAGAG CTGAATATGC CGGCTATACA TCGCCCCAGA GCACGACCAC GCTTCGCACT AATGGCACTC AAGGTGCTCG CAGAGTTTTT GTGAACTACA CATTTTACAA GACCAGAGGA GCGATGAGTA TGAAACCCGT CAAACCTGTC TTCAAACTCC TGGATACAGG TAACGCAGTT CTAGATAGAG AGGGAAGCCT TTTTTTGGAG TTTGCACCTC CCGTTGCCCA ACGTCAGTAC GATTGGAATT CGAAGCAGAT CTTTGCTTTA TCTGTCATGG AATTAGGAAC CCTTGTGGGG TTGGCTCCCG GTGAAAGTTG TGAATTTTAT CATGACCCAA ACATGGGCAA GAGCGATGCT GGCAAGATAA GGAAATCACT GAAAGTCAAC CCAATGAAAG ACGAAGATGG TTATTACTTC AATCTCAGTG TGGTGAACAA GCAAGAAAAC TTAGACGAAA GAGTGAATAT TGCCCTTACG AGAGCTGAGT ACTCCGTGAT GAGATCTTCA ATAAATTACA TTATCCCATA TTTGATGGGT TGGCACGTGT TTGTTGACCC CTCGACGGTG GATGACTTCT TGGCCGATGA TGAGCCAGTC GGCTCGATGA CAACAAAAAA TGAATGGGAT AAGTAGGGAG AAGACGGAGT ATTTTTCCTA ACAGAGCAGG CGAAGAAGAA ATGAGCGAAA CCTTGTGCAT TGGTGGTCAC TCTTAGTACA GAACAATAGA AGGACTTGAA AATTTTGTAG ATCCTCTACT CATCTCCTCG TTTACTATCC TGCATAGAAG TCAGAACAGT CCTTGTAAGT TAATGCTACA TCCCAGTGAT GTAATCGAAA TGTAAATTTT GTTGACAAGA GAAGGAAACA CACATGTATT TTCTGATGGA C |
CDS |
| >Mp3g01640.1 ATGGCTCTGC ATTCGCTCTG CAACAGCTTG TCCCTCCGCA TCGCTTCTTC TTCACGAAAG TGGATAGGTG ATGCGAAATC ATTGCGCAAG TCTTCTCAGT CTGTAGCTAT TAAACCATCG CGCCTTCAAG CAAGAGCTGA ATATGCCGGC TATACATCGC CCCAGAGCAC GACCACGCTT CGCACTAATG GCACTCAAGG TGCTCGCAGA GTTTTTGTGA ACTACACATT TTACAAGACC AGAGGAGCGA TGAGTATGAA ACCCGTCAAA CCTGTCTTCA AACTCCTGGA TACAGGTAAC GCAGTTCTAG ATAGAGAGGG AAGCCTTTTT TTGGAGTTTG CACCTCCCGT TGCCCAACGT CAGTACGATT GGAATTCGAA GCAGATCTTT GCTTTATCTG TCATGGAATT AGGAACCCTT GTGGGGTTGG CTCCCGGTGA AAGTTGTGAA TTTTATCATG ACCCAAACAT GGGCAAGAGC GATGCTGGCA AGATAAGGAA ATCACTGAAA GTCAACCCAA TGAAAGACGA AGATGGTTAT TACTTCAATC TCAGTGTGGT GAACAAGCAA GAAAACTTAG ACGAAAGAGT GAATATTGCC CTTACGAGAG CTGAGTACTC CGTGATGAGA TCTTCAATAA ATTACATTAT CCCATATTTG ATGGGTTGGC ACGTGTTTGT TGACCCCTCG ACGGTGGATG ACTTCTTGGC CGATGATGAG CCAGTCGGCT CGATGACAAC AAAAAATGAA TGGGATAAGT AG |
Protein |
| >Mp3g01640.1 MALHSLCNSL SLRIASSSRK WIGDAKSLRK SSQSVAIKPS RLQARAEYAG YTSPQSTTTL RTNGTQGARR VFVNYTFYKT RGAMSMKPVK PVFKLLDTGN AVLDREGSLF LEFAPPVAQR QYDWNSKQIF ALSVMELGTL VGLAPGESCE FYHDPNMGKS DAGKIRKSLK VNPMKDEDGY YFNLSVVNKQ ENLDERVNIA LTRAEYSVMR SSINYIIPYL MGWHVFVDPS TVDDFLADDE PVGSMTTKNE WDK |