Mp3g02830



Description

Annotation

Database ID Description
CDD cd00167 SANT
FunFam G3DSA:1.10.10.60:FF:000344 Transcription factor MYB44
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
ProSiteProfiles PS50090 Myb-like domain profile.
SMART SM00717 sant
Gene3D G3DSA:1.10.10.60 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00249 Myb-like DNA-binding domain
FunFam G3DSA:1.10.10.60:FF:000060 MYB transcription factor
SUPERFAMILY SSF46689 Homeodomain-like
PANTHER PTHR45614 MYB PROTEIN-RELATED
KEGG K09422 transcription factor MYB, plant
KOG KOG0048 Transcription factor, Myb superfamily; C-term missing; [K]
MapolyID Mapoly0007s0271 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0005634 nucleus
GO GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific

Nomenclature

Gene symbol Product Transcript ID Status
MpR2R3-MYB4 transcription factor, MYB Published

Transcript models

Transcript ID Location Sequences Extract region
Mp3g02830.1 chr3:2729881..2734719 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g02830 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g02830 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.